miRNA display CGI


Results 21 - 40 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23467 5' -66.4 NC_005259.1 + 22674 0.67 0.258694
Target:  5'- aCGCAcugACCgCCGcCGAuuuCCCCGCCgucgccgucaCCGGCu -3'
miRNA:   3'- -GCGU---UGG-GGCcGCU---GGGGCGG----------GGCCG- -5'
23467 5' -66.4 NC_005259.1 + 27927 0.67 0.258694
Target:  5'- gGUAGCggUUCGGCGACCCaGCUcgCCGGUg -3'
miRNA:   3'- gCGUUG--GGGCCGCUGGGgCGG--GGCCG- -5'
23467 5' -66.4 NC_005259.1 + 16411 0.67 0.256895
Target:  5'- aCGCAGCCCaccgaggugcccguCGaGCGGCCCaaaCCgGGCa -3'
miRNA:   3'- -GCGUUGGG--------------GC-CGCUGGGgcgGGgCCG- -5'
23467 5' -66.4 NC_005259.1 + 43283 0.67 0.252737
Target:  5'- cCGCAGCgCCCGccgcCGACgcgCCCGCCUgaaUGGCu -3'
miRNA:   3'- -GCGUUG-GGGCc---GCUG---GGGCGGG---GCCG- -5'
23467 5' -66.4 NC_005259.1 + 36954 0.67 0.252737
Target:  5'- gGgGugCCC-GCGAgaCCGCCUCGGCc -3'
miRNA:   3'- gCgUugGGGcCGCUggGGCGGGGCCG- -5'
23467 5' -66.4 NC_005259.1 + 66243 0.67 0.246892
Target:  5'- uGCAGCCaucgaCGcagcGCGGCCCgCGCCgggCGGCg -3'
miRNA:   3'- gCGUUGGg----GC----CGCUGGG-GCGGg--GCCG- -5'
23467 5' -66.4 NC_005259.1 + 24813 0.67 0.24116
Target:  5'- aGguGCCCCGGCacgccGugCCCGCaCCGa- -3'
miRNA:   3'- gCguUGGGGCCG-----CugGGGCGgGGCcg -5'
23467 5' -66.4 NC_005259.1 + 27744 0.67 0.24116
Target:  5'- cCGCugcuGCCCaCGGUG-CaUCGCCCuCGGCg -3'
miRNA:   3'- -GCGu---UGGG-GCCGCuGgGGCGGG-GCCG- -5'
23467 5' -66.4 NC_005259.1 + 42668 0.67 0.24116
Target:  5'- aCGCGGCUgcugUUGGCGAUCUCGaCCCCguugagGGCg -3'
miRNA:   3'- -GCGUUGG----GGCCGCUGGGGC-GGGG------CCG- -5'
23467 5' -66.4 NC_005259.1 + 44721 0.67 0.24116
Target:  5'- uGCAACgcaCCCGGCagcgcgcccucGACCgCGCCgaGGCu -3'
miRNA:   3'- gCGUUG---GGGCCG-----------CUGGgGCGGggCCG- -5'
23467 5' -66.4 NC_005259.1 + 6408 0.67 0.235539
Target:  5'- gCGguGCCCUgauguGGCccGACCUCGCCgaugUCGGCa -3'
miRNA:   3'- -GCguUGGGG-----CCG--CUGGGGCGG----GGCCG- -5'
23467 5' -66.4 NC_005259.1 + 20501 0.67 0.235539
Target:  5'- gGCAGCUcaUCGGCGACggUGUCCCGaGCa -3'
miRNA:   3'- gCGUUGG--GGCCGCUGggGCGGGGC-CG- -5'
23467 5' -66.4 NC_005259.1 + 53355 0.68 0.230029
Target:  5'- uCGCGcccGCCUcgaCGGCuaaaccgaGACagcaaaCCGCCCCGGCc -3'
miRNA:   3'- -GCGU---UGGG---GCCG--------CUGg-----GGCGGGGCCG- -5'
23467 5' -66.4 NC_005259.1 + 13481 0.68 0.230029
Target:  5'- gCGCuGCCCgacgaugucuCGGUc-CCUCGCCCCGGUc -3'
miRNA:   3'- -GCGuUGGG----------GCCGcuGGGGCGGGGCCG- -5'
23467 5' -66.4 NC_005259.1 + 45496 0.68 0.230029
Target:  5'- gGUGGCCuuGGUcgcuguGGCCaCCGCgCCGGUg -3'
miRNA:   3'- gCGUUGGggCCG------CUGG-GGCGgGGCCG- -5'
23467 5' -66.4 NC_005259.1 + 29638 0.68 0.226775
Target:  5'- aGCAACUCUGGCGaACCucaagacgaaugggaCCGCCUCGuuGCc -3'
miRNA:   3'- gCGUUGGGGCCGC-UGG---------------GGCGGGGC--CG- -5'
23467 5' -66.4 NC_005259.1 + 2326 0.68 0.224628
Target:  5'- aGCGACUgguaaCCGcGCagaaACCCCGCCCCucaccgGGCg -3'
miRNA:   3'- gCGUUGG-----GGC-CGc---UGGGGCGGGG------CCG- -5'
23467 5' -66.4 NC_005259.1 + 18504 0.68 0.224628
Target:  5'- cCGaCGACCUCaGCGAUcugCCCGCCgauuUCGGCa -3'
miRNA:   3'- -GC-GUUGGGGcCGCUG---GGGCGG----GGCCG- -5'
23467 5' -66.4 NC_005259.1 + 44798 0.68 0.219335
Target:  5'- aCGCu-CgCCGGUGGCCUgGCCCUuGGUc -3'
miRNA:   3'- -GCGuuGgGGCCGCUGGGgCGGGG-CCG- -5'
23467 5' -66.4 NC_005259.1 + 35727 0.68 0.219335
Target:  5'- cCGCccGACgaCCCGGCGcuGCCCgGCCCCa-- -3'
miRNA:   3'- -GCG--UUG--GGGCCGC--UGGGgCGGGGccg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.