miRNA display CGI


Results 61 - 80 of 80 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23468 3' -60 NC_005259.1 + 50007 0.71 0.284094
Target:  5'- gGCUGCCc---UCGuGCACgGGCGCUGCg -3'
miRNA:   3'- gUGGCGGcucaAGC-CGUG-CCGCGACG- -5'
23468 3' -60 NC_005259.1 + 50649 0.66 0.513633
Target:  5'- aCGCCGCCcucggggccauaGGGcaccagcgcgUCGGUGCcgacgaGGCGCUGCu -3'
miRNA:   3'- -GUGGCGG------------CUCa---------AGCCGUG------CCGCGACG- -5'
23468 3' -60 NC_005259.1 + 51508 0.7 0.319771
Target:  5'- aCGCCGCCGAucucgacgcgcGUgaccUCGuGCACGGgGCcggGCa -3'
miRNA:   3'- -GUGGCGGCU-----------CA----AGC-CGUGCCgCGa--CG- -5'
23468 3' -60 NC_005259.1 + 51662 0.7 0.30511
Target:  5'- uGCCGCgCGGGcgcgUCgGGCACGGgCGC-GCg -3'
miRNA:   3'- gUGGCG-GCUCa---AG-CCGUGCC-GCGaCG- -5'
23468 3' -60 NC_005259.1 + 51743 0.66 0.513633
Target:  5'- cCACCGCCacgcucUCGGCA--GCGUUGCg -3'
miRNA:   3'- -GUGGCGGcuca--AGCCGUgcCGCGACG- -5'
23468 3' -60 NC_005259.1 + 52145 0.67 0.484075
Target:  5'- gCACCucGCCGAGgcaGGCAgcgccgaGGCGCUcauGCa -3'
miRNA:   3'- -GUGG--CGGCUCaagCCGUg------CCGCGA---CG- -5'
23468 3' -60 NC_005259.1 + 54006 0.66 0.517632
Target:  5'- --aCGCCGGGgUCcaccagcgacgcucgGGCGCGGUGCggucUGCg -3'
miRNA:   3'- gugGCGGCUCaAG---------------CCGUGCCGCG----ACG- -5'
23468 3' -60 NC_005259.1 + 54486 0.7 0.30439
Target:  5'- -cCCGCCGAGggucaUCGGCgggcaugGCGGCGaUGUg -3'
miRNA:   3'- guGGCGGCUCa----AGCCG-------UGCCGCgACG- -5'
23468 3' -60 NC_005259.1 + 55019 0.7 0.312375
Target:  5'- gGCgGUCGuc-UCGGCACGG-GCUGCc -3'
miRNA:   3'- gUGgCGGCucaAGCCGUGCCgCGACG- -5'
23468 3' -60 NC_005259.1 + 57180 0.7 0.342742
Target:  5'- uCGCCGCCGuAGUUCGGCccgcgaaccucgACGcCGUUGa -3'
miRNA:   3'- -GUGGCGGC-UCAAGCCG------------UGCcGCGACg -5'
23468 3' -60 NC_005259.1 + 57440 0.67 0.455356
Target:  5'- uUACgCGgCGAGgUUGGUGCGaCGCUGCg -3'
miRNA:   3'- -GUG-GCgGCUCaAGCCGUGCcGCGACG- -5'
23468 3' -60 NC_005259.1 + 58546 0.66 0.558232
Target:  5'- -cCCGUCGAGguuacggcUCGGgcgguugggccggauCGCGGCGCgGCu -3'
miRNA:   3'- guGGCGGCUCa-------AGCC---------------GUGCCGCGaCG- -5'
23468 3' -60 NC_005259.1 + 58748 0.77 0.119234
Target:  5'- gCACCGgCGaAGUUCGGCgaACGaCGCUGCg -3'
miRNA:   3'- -GUGGCgGC-UCAAGCCG--UGCcGCGACG- -5'
23468 3' -60 NC_005259.1 + 58787 0.67 0.501717
Target:  5'- gCGCCgGUCGAGgcggugauugccUCGGCGgGcucGCGCUGCu -3'
miRNA:   3'- -GUGG-CGGCUCa-----------AGCCGUgC---CGCGACG- -5'
23468 3' -60 NC_005259.1 + 59135 0.7 0.342742
Target:  5'- gAgCGUCGAGcUCGGCAgCGGUgccggggaGCUGCu -3'
miRNA:   3'- gUgGCGGCUCaAGCCGU-GCCG--------CGACG- -5'
23468 3' -60 NC_005259.1 + 59610 0.66 0.543904
Target:  5'- -cCCGCCGAcaggacaGGCacccACGGCGuCUGCc -3'
miRNA:   3'- guGGCGGCUcaag---CCG----UGCCGC-GACG- -5'
23468 3' -60 NC_005259.1 + 60153 0.66 0.553102
Target:  5'- gGCCGCCGccucagCGGCcucacggGCGGCGaacgcCUGCu -3'
miRNA:   3'- gUGGCGGCucaa--GCCG-------UGCCGC-----GACG- -5'
23468 3' -60 NC_005259.1 + 60278 0.66 0.554127
Target:  5'- gCGCUGCCGGG--CGGCcaucgucguCGGUGCgGCc -3'
miRNA:   3'- -GUGGCGGCUCaaGCCGu--------GCCGCGaCG- -5'
23468 3' -60 NC_005259.1 + 61064 0.66 0.543904
Target:  5'- cUugUGCCGGGcaUCGGCAUaGGCGUcGUc -3'
miRNA:   3'- -GugGCGGCUCa-AGCCGUG-CCGCGaCG- -5'
23468 3' -60 NC_005259.1 + 66654 0.72 0.251638
Target:  5'- uGCUGCCGG--UCGGC--GGUGCUGCg -3'
miRNA:   3'- gUGGCGGCUcaAGCCGugCCGCGACG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.