miRNA display CGI


Results 41 - 60 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23468 3' -60 NC_005259.1 + 34361 0.74 0.186159
Target:  5'- cCACCGCCGGuaUCGGCGCGuaaccucgacGCGCaacUGCu -3'
miRNA:   3'- -GUGGCGGCUcaAGCCGUGC----------CGCG---ACG- -5'
23468 3' -60 NC_005259.1 + 4976 0.75 0.14355
Target:  5'- -uCCGCCGAGUUCGGCcgAUGGCcggGCa -3'
miRNA:   3'- guGGCGGCUCAAGCCG--UGCCGcgaCG- -5'
23468 3' -60 NC_005259.1 + 24041 0.76 0.139818
Target:  5'- aACCGCCGcaacGUcgUCGGCGCGGUGCUc- -3'
miRNA:   3'- gUGGCGGCu---CA--AGCCGUGCCGCGAcg -5'
23468 3' -60 NC_005259.1 + 58748 0.77 0.119234
Target:  5'- gCACCGgCGaAGUUCGGCgaACGaCGCUGCg -3'
miRNA:   3'- -GUGGCgGC-UCAAGCCG--UGCcGCGACG- -5'
23468 3' -60 NC_005259.1 + 13428 0.82 0.051035
Target:  5'- uCGCCGCCGGggccgcgcuaggcGUgaccgUCGGCGCGGCGCUGg -3'
miRNA:   3'- -GUGGCGGCU-------------CA-----AGCCGUGCCGCGACg -5'
23468 3' -60 NC_005259.1 + 2123 0.71 0.297268
Target:  5'- aCGCuCGCCGAGgucaCGcagacccGCACGGUGCUGg -3'
miRNA:   3'- -GUG-GCGGCUCaa--GC-------CGUGCCGCGACg -5'
23468 3' -60 NC_005259.1 + 33898 0.71 0.297975
Target:  5'- cCACCcgcgcgacggGCCGAGacCGGcCACGGUGCgaGCa -3'
miRNA:   3'- -GUGG----------CGGCUCaaGCC-GUGCCGCGa-CG- -5'
23468 3' -60 NC_005259.1 + 57180 0.7 0.342742
Target:  5'- uCGCCGCCGuAGUUCGGCccgcgaaccucgACGcCGUUGa -3'
miRNA:   3'- -GUGGCGGC-UCAAGCCG------------UGCcGCGACg -5'
23468 3' -60 NC_005259.1 + 21176 0.7 0.342742
Target:  5'- gGCaGUCGGGUcaUCGGCGCGaGCaccaaGCUGCa -3'
miRNA:   3'- gUGgCGGCUCA--AGCCGUGC-CG-----CGACG- -5'
23468 3' -60 NC_005259.1 + 646 0.7 0.342742
Target:  5'- cCACCGCCGAGgaCGuGCucgAgGGCauGCUGUg -3'
miRNA:   3'- -GUGGCGGCUCaaGC-CG---UgCCG--CGACG- -5'
23468 3' -60 NC_005259.1 + 59135 0.7 0.342742
Target:  5'- gAgCGUCGAGcUCGGCAgCGGUgccggggaGCUGCu -3'
miRNA:   3'- gUgGCGGCUCaAGCCGU-GCCG--------CGACG- -5'
23468 3' -60 NC_005259.1 + 48182 0.7 0.319771
Target:  5'- cCGCCGCCGGGUgUCGGaC-CGG-GCaUGCc -3'
miRNA:   3'- -GUGGCGGCUCA-AGCC-GuGCCgCG-ACG- -5'
23468 3' -60 NC_005259.1 + 51508 0.7 0.319771
Target:  5'- aCGCCGCCGAucucgacgcgcGUgaccUCGuGCACGGgGCcggGCa -3'
miRNA:   3'- -GUGGCGGCU-----------CA----AGC-CGUGCCgCGa--CG- -5'
23468 3' -60 NC_005259.1 + 55019 0.7 0.312375
Target:  5'- gGCgGUCGuc-UCGGCACGG-GCUGCc -3'
miRNA:   3'- gUGgCGGCucaAGCCGUGCCgCGACG- -5'
23468 3' -60 NC_005259.1 + 32365 0.7 0.312375
Target:  5'- gACCGCCGuGUagGGCG-GGCaCUGCc -3'
miRNA:   3'- gUGGCGGCuCAagCCGUgCCGcGACG- -5'
23468 3' -60 NC_005259.1 + 28961 0.7 0.312375
Target:  5'- gCAUCGCCGAGgUCGGUgccgaggccGCGaGCGCccGCu -3'
miRNA:   3'- -GUGGCGGCUCaAGCCG---------UGC-CGCGa-CG- -5'
23468 3' -60 NC_005259.1 + 51662 0.7 0.30511
Target:  5'- uGCCGCgCGGGcgcgUCgGGCACGGgCGC-GCg -3'
miRNA:   3'- gUGGCG-GCUCa---AG-CCGUGCC-GCGaCG- -5'
23468 3' -60 NC_005259.1 + 7179 0.7 0.30511
Target:  5'- gCACCGgCGAGUgccCGGCcuGCGGacgcaccggGCUGCg -3'
miRNA:   3'- -GUGGCgGCUCAa--GCCG--UGCCg--------CGACG- -5'
23468 3' -60 NC_005259.1 + 54486 0.7 0.30439
Target:  5'- -cCCGCCGAGggucaUCGGCgggcaugGCGGCGaUGUg -3'
miRNA:   3'- guGGCGGCUCa----AGCCG-------UGCCGCgACG- -5'
23468 3' -60 NC_005259.1 + 35883 0.71 0.297975
Target:  5'- cCGCCGCCGAGgcagaccaCGGCGagccauucuGCGUUGCg -3'
miRNA:   3'- -GUGGCGGCUCaa------GCCGUgc-------CGCGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.