miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23469 5' -64.2 NC_005259.1 + 3265 0.73 0.109313
Target:  5'- cAUCCUGCUCGGGUGGuuucccgucGCCGCCucgCCGGUc -3'
miRNA:   3'- -UAGGACGGGCUCGUC---------UGGCGG---GGCCG- -5'
23469 5' -64.2 NC_005259.1 + 7997 0.71 0.149526
Target:  5'- cUCUUGaaccCCCG-GUAGcccCCGCCCCGGCg -3'
miRNA:   3'- uAGGAC----GGGCuCGUCu--GGCGGGGCCG- -5'
23469 5' -64.2 NC_005259.1 + 9091 0.66 0.341796
Target:  5'- -cCCguUGCCCGccgagGGCGGggaacucaaucccACgCGCCCCGGUa -3'
miRNA:   3'- uaGG--ACGGGC-----UCGUC-------------UG-GCGGGGCCG- -5'
23469 5' -64.2 NC_005259.1 + 9552 0.71 0.157419
Target:  5'- --gCUGCCCG-GCcucGACCGCgUCGGCg -3'
miRNA:   3'- uagGACGGGCuCGu--CUGGCGgGGCCG- -5'
23469 5' -64.2 NC_005259.1 + 13164 0.71 0.157419
Target:  5'- cAUCCcGCCCGA---GACCG-CCCGGCa -3'
miRNA:   3'- -UAGGaCGGGCUcguCUGGCgGGGCCG- -5'
23469 5' -64.2 NC_005259.1 + 14195 0.71 0.138361
Target:  5'- cUCaccCCCGAGCAGGCCGggaucaacuaCCCGGCg -3'
miRNA:   3'- uAGgacGGGCUCGUCUGGCg---------GGGCCG- -5'
23469 5' -64.2 NC_005259.1 + 14877 0.67 0.265293
Target:  5'- --gCUGCCCGAGCc-GCCGCCguaUGGUc -3'
miRNA:   3'- uagGACGGGCUCGucUGGCGGg--GCCG- -5'
23469 5' -64.2 NC_005259.1 + 16206 0.66 0.327386
Target:  5'- -cCCcGCCUGAGUuccugaucagguGGGCCGaacgcaCCCCGGUg -3'
miRNA:   3'- uaGGaCGGGCUCG------------UCUGGC------GGGGCCG- -5'
23469 5' -64.2 NC_005259.1 + 16563 0.69 0.197758
Target:  5'- gAUCCcGCCCaccGGGCAGAUCGCCgaGGa -3'
miRNA:   3'- -UAGGaCGGG---CUCGUCUGGCGGggCCg -5'
23469 5' -64.2 NC_005259.1 + 16692 0.7 0.188078
Target:  5'- gAUCCUGggcaCCGAGguGACCGCCgagcaGGUc -3'
miRNA:   3'- -UAGGACg---GGCUCguCUGGCGGgg---CCG- -5'
23469 5' -64.2 NC_005259.1 + 17921 0.71 0.161505
Target:  5'- ---aUGCCCG-GUcuGGACCGCgCCCGGUg -3'
miRNA:   3'- uaggACGGGCuCG--UCUGGCG-GGGCCG- -5'
23469 5' -64.2 NC_005259.1 + 18578 0.75 0.07941
Target:  5'- -gCCgacCCCGAGCAGACCGaCCCCGa- -3'
miRNA:   3'- uaGGac-GGGCUCGUCUGGC-GGGGCcg -5'
23469 5' -64.2 NC_005259.1 + 19657 0.66 0.342567
Target:  5'- -aCC-GCCuCGGGCAG-CCGCuacaucCCCGGUc -3'
miRNA:   3'- uaGGaCGG-GCUCGUCuGGCG------GGGCCG- -5'
23469 5' -64.2 NC_005259.1 + 20163 0.66 0.312708
Target:  5'- -cCCUGgccaCCGcGCccGCCGCCUCGGCu -3'
miRNA:   3'- uaGGACg---GGCuCGucUGGCGGGGCCG- -5'
23469 5' -64.2 NC_005259.1 + 23886 0.67 0.284864
Target:  5'- uAUCCgcugccGCCCGAGCc-GCCGCgCCCGcCg -3'
miRNA:   3'- -UAGGa-----CGGGCUCGucUGGCG-GGGCcG- -5'
23469 5' -64.2 NC_005259.1 + 25912 0.69 0.20787
Target:  5'- -gCC-GCCUGAGCc-GCCGCCgCCGGUc -3'
miRNA:   3'- uaGGaCGGGCUCGucUGGCGG-GGCCG- -5'
23469 5' -64.2 NC_005259.1 + 26105 0.75 0.081569
Target:  5'- -aCC--CCCGAGCAGACCGCCgccgCCGGUc -3'
miRNA:   3'- uaGGacGGGCUCGUCUGGCGG----GGCCG- -5'
23469 5' -64.2 NC_005259.1 + 26833 0.66 0.312708
Target:  5'- ---gUGCCgGGGCGGuCUGCUCgGGCa -3'
miRNA:   3'- uaggACGGgCUCGUCuGGCGGGgCCG- -5'
23469 5' -64.2 NC_005259.1 + 28752 0.69 0.20787
Target:  5'- ----cGCCCGAGCgugAGAUCGUCgCCGGUg -3'
miRNA:   3'- uaggaCGGGCUCG---UCUGGCGG-GGCCG- -5'
23469 5' -64.2 NC_005259.1 + 29915 0.68 0.24091
Target:  5'- --gCUGCCCGAgaccaucgacGCGuGGCCGCCaCgCGGCc -3'
miRNA:   3'- uagGACGGGCU----------CGU-CUGGCGG-G-GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.