miRNA display CGI


Results 21 - 40 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23469 5' -64.2 NC_005259.1 + 28752 0.69 0.20787
Target:  5'- ----cGCCCGAGCgugAGAUCGUCgCCGGUg -3'
miRNA:   3'- uaggaCGGGCUCG---UCUGGCGG-GGCCG- -5'
23469 5' -64.2 NC_005259.1 + 46821 0.69 0.20787
Target:  5'- -aCCgGCCaccuGAGU-GAgCGCCCCGGCg -3'
miRNA:   3'- uaGGaCGGg---CUCGuCUgGCGGGGCCG- -5'
23469 5' -64.2 NC_005259.1 + 25912 0.69 0.20787
Target:  5'- -gCC-GCCUGAGCc-GCCGCCgCCGGUc -3'
miRNA:   3'- uaGGaCGGGCUCGucUGGCGG-GGCCG- -5'
23469 5' -64.2 NC_005259.1 + 41230 0.69 0.20479
Target:  5'- -cCCUGCUCGGcggugacgauccgguGCGccucACCGCCCCGGUc -3'
miRNA:   3'- uaGGACGGGCU---------------CGUc---UGGCGGGGCCG- -5'
23469 5' -64.2 NC_005259.1 + 63148 0.69 0.202759
Target:  5'- uGUCCUcGCCCacguuGAGCAG-CCGCCgCaGCg -3'
miRNA:   3'- -UAGGA-CGGG-----CUCGUCuGGCGGgGcCG- -5'
23469 5' -64.2 NC_005259.1 + 16563 0.69 0.197758
Target:  5'- gAUCCcGCCCaccGGGCAGAUCGCCgaGGa -3'
miRNA:   3'- -UAGGaCGGG---CUCGUCUGGCGGggCCg -5'
23469 5' -64.2 NC_005259.1 + 16692 0.7 0.188078
Target:  5'- gAUCCUGggcaCCGAGguGACCGCCgagcaGGUc -3'
miRNA:   3'- -UAGGACg---GGCUCguCUGGCGGgg---CCG- -5'
23469 5' -64.2 NC_005259.1 + 37636 0.7 0.183396
Target:  5'- uGUgCUGCCCGAugaccGCAccgccGCCGCCgCCGGUg -3'
miRNA:   3'- -UAgGACGGGCU-----CGUc----UGGCGG-GGCCG- -5'
23469 5' -64.2 NC_005259.1 + 32540 0.7 0.183396
Target:  5'- -gCUUGaCCuuGCuguuGGCCGCCCCGGCg -3'
miRNA:   3'- uaGGACgGGcuCGu---CUGGCGGGGCCG- -5'
23469 5' -64.2 NC_005259.1 + 44478 0.7 0.182934
Target:  5'- -cCCUGgCCGGGCcaguuggugacguAGACCgggguGCCCUGGCc -3'
miRNA:   3'- uaGGACgGGCUCG-------------UCUGG-----CGGGGCCG- -5'
23469 5' -64.2 NC_005259.1 + 17921 0.71 0.161505
Target:  5'- ---aUGCCCG-GUcuGGACCGCgCCCGGUg -3'
miRNA:   3'- uaggACGGGCuCG--UCUGGCG-GGGCCG- -5'
23469 5' -64.2 NC_005259.1 + 9552 0.71 0.157419
Target:  5'- --gCUGCCCG-GCcucGACCGCgUCGGCg -3'
miRNA:   3'- uagGACGGGCuCGu--CUGGCGgGGCCG- -5'
23469 5' -64.2 NC_005259.1 + 13164 0.71 0.157419
Target:  5'- cAUCCcGCCCGA---GACCG-CCCGGCa -3'
miRNA:   3'- -UAGGaCGGGCUcguCUGGCgGGGCCG- -5'
23469 5' -64.2 NC_005259.1 + 63418 0.71 0.153426
Target:  5'- -cCUUGCucaugCCGAGCAG-CCGCUCgGGCg -3'
miRNA:   3'- uaGGACG-----GGCUCGUCuGGCGGGgCCG- -5'
23469 5' -64.2 NC_005259.1 + 7997 0.71 0.149526
Target:  5'- cUCUUGaaccCCCG-GUAGcccCCGCCCCGGCg -3'
miRNA:   3'- uAGGAC----GGGCuCGUCu--GGCGGGGCCG- -5'
23469 5' -64.2 NC_005259.1 + 14195 0.71 0.138361
Target:  5'- cUCaccCCCGAGCAGGCCGggaucaacuaCCCGGCg -3'
miRNA:   3'- uAGgacGGGCUCGUCUGGCg---------GGGCCG- -5'
23469 5' -64.2 NC_005259.1 + 36951 0.72 0.124664
Target:  5'- -aCCggggUGCCCGcG-AGACCGCCUCGGCc -3'
miRNA:   3'- uaGG----ACGGGCuCgUCUGGCGGGGCCG- -5'
23469 5' -64.2 NC_005259.1 + 67735 0.72 0.121442
Target:  5'- gAUCCgauaCCGgcGGCcacuAGGCCGCCCCGGCc -3'
miRNA:   3'- -UAGGacg-GGC--UCG----UCUGGCGGGGCCG- -5'
23469 5' -64.2 NC_005259.1 + 44839 0.73 0.115228
Target:  5'- gAUCCgacaccgcGCCCGAGCAG-UCGCUcagaCCGGCg -3'
miRNA:   3'- -UAGGa-------CGGGCUCGUCuGGCGG----GGCCG- -5'
23469 5' -64.2 NC_005259.1 + 3265 0.73 0.109313
Target:  5'- cAUCCUGCUCGGGUGGuuucccgucGCCGCCucgCCGGUc -3'
miRNA:   3'- -UAGGACGGGCUCGUC---------UGGCGG---GGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.