Results 21 - 40 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23469 | 5' | -64.2 | NC_005259.1 | + | 46821 | 0.69 | 0.20787 |
Target: 5'- -aCCgGCCaccuGAGU-GAgCGCCCCGGCg -3' miRNA: 3'- uaGGaCGGg---CUCGuCUgGCGGGGCCG- -5' |
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23469 | 5' | -64.2 | NC_005259.1 | + | 28752 | 0.69 | 0.20787 |
Target: 5'- ----cGCCCGAGCgugAGAUCGUCgCCGGUg -3' miRNA: 3'- uaggaCGGGCUCG---UCUGGCGG-GGCCG- -5' |
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23469 | 5' | -64.2 | NC_005259.1 | + | 25912 | 0.69 | 0.20787 |
Target: 5'- -gCC-GCCUGAGCc-GCCGCCgCCGGUc -3' miRNA: 3'- uaGGaCGGGCUCGucUGGCGG-GGCCG- -5' |
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23469 | 5' | -64.2 | NC_005259.1 | + | 41230 | 0.69 | 0.20479 |
Target: 5'- -cCCUGCUCGGcggugacgauccgguGCGccucACCGCCCCGGUc -3' miRNA: 3'- uaGGACGGGCU---------------CGUc---UGGCGGGGCCG- -5' |
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23469 | 5' | -64.2 | NC_005259.1 | + | 63148 | 0.69 | 0.202759 |
Target: 5'- uGUCCUcGCCCacguuGAGCAG-CCGCCgCaGCg -3' miRNA: 3'- -UAGGA-CGGG-----CUCGUCuGGCGGgGcCG- -5' |
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23469 | 5' | -64.2 | NC_005259.1 | + | 16563 | 0.69 | 0.197758 |
Target: 5'- gAUCCcGCCCaccGGGCAGAUCGCCgaGGa -3' miRNA: 3'- -UAGGaCGGG---CUCGUCUGGCGGggCCg -5' |
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23469 | 5' | -64.2 | NC_005259.1 | + | 16692 | 0.7 | 0.188078 |
Target: 5'- gAUCCUGggcaCCGAGguGACCGCCgagcaGGUc -3' miRNA: 3'- -UAGGACg---GGCUCguCUGGCGGgg---CCG- -5' |
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23469 | 5' | -64.2 | NC_005259.1 | + | 37636 | 0.7 | 0.183396 |
Target: 5'- uGUgCUGCCCGAugaccGCAccgccGCCGCCgCCGGUg -3' miRNA: 3'- -UAgGACGGGCU-----CGUc----UGGCGG-GGCCG- -5' |
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23469 | 5' | -64.2 | NC_005259.1 | + | 32540 | 0.7 | 0.183396 |
Target: 5'- -gCUUGaCCuuGCuguuGGCCGCCCCGGCg -3' miRNA: 3'- uaGGACgGGcuCGu---CUGGCGGGGCCG- -5' |
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23469 | 5' | -64.2 | NC_005259.1 | + | 44478 | 0.7 | 0.182934 |
Target: 5'- -cCCUGgCCGGGCcaguuggugacguAGACCgggguGCCCUGGCc -3' miRNA: 3'- uaGGACgGGCUCG-------------UCUGG-----CGGGGCCG- -5' |
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23469 | 5' | -64.2 | NC_005259.1 | + | 17921 | 0.71 | 0.161505 |
Target: 5'- ---aUGCCCG-GUcuGGACCGCgCCCGGUg -3' miRNA: 3'- uaggACGGGCuCG--UCUGGCG-GGGCCG- -5' |
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23469 | 5' | -64.2 | NC_005259.1 | + | 13164 | 0.71 | 0.157419 |
Target: 5'- cAUCCcGCCCGA---GACCG-CCCGGCa -3' miRNA: 3'- -UAGGaCGGGCUcguCUGGCgGGGCCG- -5' |
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23469 | 5' | -64.2 | NC_005259.1 | + | 9552 | 0.71 | 0.157419 |
Target: 5'- --gCUGCCCG-GCcucGACCGCgUCGGCg -3' miRNA: 3'- uagGACGGGCuCGu--CUGGCGgGGCCG- -5' |
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23469 | 5' | -64.2 | NC_005259.1 | + | 63418 | 0.71 | 0.153426 |
Target: 5'- -cCUUGCucaugCCGAGCAG-CCGCUCgGGCg -3' miRNA: 3'- uaGGACG-----GGCUCGUCuGGCGGGgCCG- -5' |
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23469 | 5' | -64.2 | NC_005259.1 | + | 7997 | 0.71 | 0.149526 |
Target: 5'- cUCUUGaaccCCCG-GUAGcccCCGCCCCGGCg -3' miRNA: 3'- uAGGAC----GGGCuCGUCu--GGCGGGGCCG- -5' |
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23469 | 5' | -64.2 | NC_005259.1 | + | 14195 | 0.71 | 0.138361 |
Target: 5'- cUCaccCCCGAGCAGGCCGggaucaacuaCCCGGCg -3' miRNA: 3'- uAGgacGGGCUCGUCUGGCg---------GGGCCG- -5' |
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23469 | 5' | -64.2 | NC_005259.1 | + | 36951 | 0.72 | 0.124664 |
Target: 5'- -aCCggggUGCCCGcG-AGACCGCCUCGGCc -3' miRNA: 3'- uaGG----ACGGGCuCgUCUGGCGGGGCCG- -5' |
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23469 | 5' | -64.2 | NC_005259.1 | + | 67735 | 0.72 | 0.121442 |
Target: 5'- gAUCCgauaCCGgcGGCcacuAGGCCGCCCCGGCc -3' miRNA: 3'- -UAGGacg-GGC--UCG----UCUGGCGGGGCCG- -5' |
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23469 | 5' | -64.2 | NC_005259.1 | + | 44839 | 0.73 | 0.115228 |
Target: 5'- gAUCCgacaccgcGCCCGAGCAG-UCGCUcagaCCGGCg -3' miRNA: 3'- -UAGGa-------CGGGCUCGUCuGGCGG----GGCCG- -5' |
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23469 | 5' | -64.2 | NC_005259.1 | + | 3265 | 0.73 | 0.109313 |
Target: 5'- cAUCCUGCUCGGGUGGuuucccgucGCCGCCucgCCGGUc -3' miRNA: 3'- -UAGGACGGGCUCGUC---------UGGCGG---GGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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