miRNA display CGI


Results 1 - 11 of 11 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2347 3' -55.6 NC_001416.1 + 14028 1.08 0.000874
Target:  5'- aCAGCCGGACCGCUAUAACCGCACUCGu -3'
miRNA:   3'- -GUCGGCCUGGCGAUAUUGGCGUGAGC- -5'
2347 3' -55.6 NC_001416.1 + 4688 0.84 0.048242
Target:  5'- uCAGCCGGACgcgggCGCUGcAGCCGUACUCGg -3'
miRNA:   3'- -GUCGGCCUG-----GCGAUaUUGGCGUGAGC- -5'
2347 3' -55.6 NC_001416.1 + 9483 0.75 0.199762
Target:  5'- -uGCCGGuuGCCGCUGUuACCGUGCUgCGa -3'
miRNA:   3'- guCGGCC--UGGCGAUAuUGGCGUGA-GC- -5'
2347 3' -55.6 NC_001416.1 + 43972 0.75 0.228221
Target:  5'- aAGCCGGAuUCGgUAUGGCUGCAUUCu -3'
miRNA:   3'- gUCGGCCU-GGCgAUAUUGGCGUGAGc -5'
2347 3' -55.6 NC_001416.1 + 5283 0.72 0.334336
Target:  5'- uGGCCuccuGACCGCUGUAcACUGCAgcCUCGg -3'
miRNA:   3'- gUCGGc---CUGGCGAUAU-UGGCGU--GAGC- -5'
2347 3' -55.6 NC_001416.1 + 1915 0.71 0.359462
Target:  5'- cCAGCUGGACCGCUAcgAAauGCGCg-- -3'
miRNA:   3'- -GUCGGCCUGGCGAUa-UUggCGUGagc -5'
2347 3' -55.6 NC_001416.1 + 16423 0.69 0.452267
Target:  5'- -uGCCGGACgGCUuUGGCgGCACg-- -3'
miRNA:   3'- guCGGCCUGgCGAuAUUGgCGUGagc -5'
2347 3' -55.6 NC_001416.1 + 19057 0.68 0.52442
Target:  5'- gGGCCGGAgUGaCUGUcACCGCAagugCGg -3'
miRNA:   3'- gUCGGCCUgGC-GAUAuUGGCGUga--GC- -5'
2347 3' -55.6 NC_001416.1 + 17554 0.67 0.600531
Target:  5'- -cGuCCGGGCCGUgcUGACCaGcCGCUCa -3'
miRNA:   3'- guC-GGCCUGGCGauAUUGG-C-GUGAGc -5'
2347 3' -55.6 NC_001416.1 + 2864 0.66 0.666907
Target:  5'- gGGCCGGACgGC-AUGacaucGCUGCGCg-- -3'
miRNA:   3'- gUCGGCCUGgCGaUAU-----UGGCGUGagc -5'
2347 3' -55.6 NC_001416.1 + 5438 0.66 0.666907
Target:  5'- gCAGCCGGACgugaaCGCgcagAUcACCGCAg-CGg -3'
miRNA:   3'- -GUCGGCCUG-----GCGa---UAuUGGCGUgaGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.