miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23470 5' -57.3 NC_005259.1 + 3335 0.66 0.625769
Target:  5'- cGGGCaGCUCugCGUGCUCggcacgaCUCGaCg -3'
miRNA:   3'- -UUCGaCGAGugGCGCGAGaa-----GAGCgG- -5'
23470 5' -57.3 NC_005259.1 + 24145 0.66 0.625769
Target:  5'- --cCUGCUCGCCgaguuGCGCgaugUCUaCGCCa -3'
miRNA:   3'- uucGACGAGUGG-----CGCGaga-AGA-GCGG- -5'
23470 5' -57.3 NC_005259.1 + 49742 0.66 0.625769
Target:  5'- aGAGCUGCUCGUCaGUGacggUCUUGCCg -3'
miRNA:   3'- -UUCGACGAGUGG-CGCgagaAGAGCGG- -5'
23470 5' -57.3 NC_005259.1 + 59162 0.66 0.614922
Target:  5'- gGAGCUGCUCAggGCGCUUauacauggcgCUUGUCu -3'
miRNA:   3'- -UUCGACGAGUggCGCGAGaa--------GAGCGG- -5'
23470 5' -57.3 NC_005259.1 + 8470 0.66 0.60409
Target:  5'- aGAGCUGCacgagCACCGCGCUg-UCg-GCa -3'
miRNA:   3'- -UUCGACGa----GUGGCGCGAgaAGagCGg -5'
23470 5' -57.3 NC_005259.1 + 48015 0.67 0.593281
Target:  5'- uGAGCUGCUgCACCGCGCcCacgaUgUUGaCCa -3'
miRNA:   3'- -UUCGACGA-GUGGCGCGaGa---AgAGC-GG- -5'
23470 5' -57.3 NC_005259.1 + 50697 0.67 0.582504
Target:  5'- -cGCUGCUCGucgUCGCGCUUga---GCCg -3'
miRNA:   3'- uuCGACGAGU---GGCGCGAGaagagCGG- -5'
23470 5' -57.3 NC_005259.1 + 31810 0.67 0.582504
Target:  5'- cGAGCUcGaccgacccCACCGCGCccgcgucgaUCUUCUCGCg -3'
miRNA:   3'- -UUCGA-Cga------GUGGCGCG---------AGAAGAGCGg -5'
23470 5' -57.3 NC_005259.1 + 52026 0.67 0.582504
Target:  5'- cAGGCcGCcgCACUGCGCgCUg-UCGCCg -3'
miRNA:   3'- -UUCGaCGa-GUGGCGCGaGAagAGCGG- -5'
23470 5' -57.3 NC_005259.1 + 1364 0.67 0.582504
Target:  5'- uGGGCcGCUCGCCGCGC-CgcC-CGCg -3'
miRNA:   3'- -UUCGaCGAGUGGCGCGaGaaGaGCGg -5'
23470 5' -57.3 NC_005259.1 + 48603 0.67 0.571767
Target:  5'- cGAGCgcggGCgcuacCGCCGUGCgcaCUgcCUCGCCg -3'
miRNA:   3'- -UUCGa---CGa----GUGGCGCGa--GAa-GAGCGG- -5'
23470 5' -57.3 NC_005259.1 + 63646 0.67 0.571767
Target:  5'- cGAGCUGCUCGCUG-GC-CgggaCGCCg -3'
miRNA:   3'- -UUCGACGAGUGGCgCGaGaagaGCGG- -5'
23470 5' -57.3 NC_005259.1 + 8911 0.67 0.561078
Target:  5'- -uGCUGaCggGCCGCGUUCUgggCUCGUUu -3'
miRNA:   3'- uuCGAC-GagUGGCGCGAGAa--GAGCGG- -5'
23470 5' -57.3 NC_005259.1 + 14720 0.67 0.550445
Target:  5'- ----aGCaCGCCGCGCUCg--UCGCCg -3'
miRNA:   3'- uucgaCGaGUGGCGCGAGaagAGCGG- -5'
23470 5' -57.3 NC_005259.1 + 5202 0.68 0.529372
Target:  5'- -cGCcaaGCUCACCGCGCUCgccgaGCa -3'
miRNA:   3'- uuCGa--CGAGUGGCGCGAGaagagCGg -5'
23470 5' -57.3 NC_005259.1 + 58823 0.68 0.495291
Target:  5'- -cGCUGCUCggcacccucGCCGCcCUCggucucacccucgggCUCGCCg -3'
miRNA:   3'- uuCGACGAG---------UGGCGcGAGaa-------------GAGCGG- -5'
23470 5' -57.3 NC_005259.1 + 5508 0.68 0.474127
Target:  5'- cGAGCUacGCgCGCCGCGCccgcaagcuguggCUgcUCUCGCCc -3'
miRNA:   3'- -UUCGA--CGaGUGGCGCGa------------GA--AGAGCGG- -5'
23470 5' -57.3 NC_005259.1 + 2211 0.69 0.458311
Target:  5'- -uGCUGCgCACCgaGCGCcCggcCUCGCCa -3'
miRNA:   3'- uuCGACGaGUGG--CGCGaGaa-GAGCGG- -5'
23470 5' -57.3 NC_005259.1 + 18253 0.69 0.423795
Target:  5'- cGAGCUGCcCGCCGCGC-CUgaaccugagacgaccUCgaCGCCc -3'
miRNA:   3'- -UUCGACGaGUGGCGCGaGA---------------AGa-GCGG- -5'
23470 5' -57.3 NC_005259.1 + 31563 0.7 0.401668
Target:  5'- -uGCcGCUgCACCGCGC-CUgaUCgUCGCCa -3'
miRNA:   3'- uuCGaCGA-GUGGCGCGaGA--AG-AGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.