miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23472 3' -63.4 NC_005259.1 + 1829 0.66 0.353832
Target:  5'- cGCCGACCUGcuCGcCGCUGCcgccgaGGCCGAg -3'
miRNA:   3'- -CGGUUGGGCc-GCcGCGACGa-----CCGGUU- -5'
23472 3' -63.4 NC_005259.1 + 4108 0.67 0.273436
Target:  5'- uGCCaAACCuCGGCGGC-CUcGacgUGGCCAAg -3'
miRNA:   3'- -CGG-UUGG-GCCGCCGcGA-Cg--ACCGGUU- -5'
23472 3' -63.4 NC_005259.1 + 4503 0.66 0.315341
Target:  5'- cGCCAccGCgCCGGgagUGGCGCUGCgcGGCa-- -3'
miRNA:   3'- -CGGU--UG-GGCC---GCCGCGACGa-CCGguu -5'
23472 3' -63.4 NC_005259.1 + 5717 0.68 0.254214
Target:  5'- gGCCAGCgCCGGaCGGCGgccauuCUcGC-GGCCAAg -3'
miRNA:   3'- -CGGUUG-GGCC-GCCGC------GA-CGaCCGGUU- -5'
23472 3' -63.4 NC_005259.1 + 8591 0.69 0.219111
Target:  5'- cGCaCGAUCCGGCGGCcugaGUUGCuucaUGGUCAc -3'
miRNA:   3'- -CG-GUUGGGCCGCCG----CGACG----ACCGGUu -5'
23472 3' -63.4 NC_005259.1 + 8772 0.71 0.161246
Target:  5'- gGCCAGCgCGGCGGUGaugaGCUcGGCCc- -3'
miRNA:   3'- -CGGUUGgGCCGCCGCga--CGA-CCGGuu -5'
23472 3' -63.4 NC_005259.1 + 8821 0.66 0.337271
Target:  5'- cGCCGGgCCGGUGaguugacGCGCUGC--GCCGAc -3'
miRNA:   3'- -CGGUUgGGCCGC-------CGCGACGacCGGUU- -5'
23472 3' -63.4 NC_005259.1 + 14209 0.71 0.153055
Target:  5'- gGCCGggaucaacuACCCGGCGcGCGUcgUGCguaucgGGCCGGg -3'
miRNA:   3'- -CGGU---------UGGGCCGC-CGCG--ACGa-----CCGGUU- -5'
23472 3' -63.4 NC_005259.1 + 15459 0.69 0.219111
Target:  5'- aUCAACCCguuGGCcaaGGCGCaacucucGCUGGCCAAc -3'
miRNA:   3'- cGGUUGGG---CCG---CCGCGa------CGACCGGUU- -5'
23472 3' -63.4 NC_005259.1 + 24285 0.66 0.32278
Target:  5'- cGCuCGACCuCGGgaUGGUGCUGCUGcGCgAu -3'
miRNA:   3'- -CG-GUUGG-GCC--GCCGCGACGAC-CGgUu -5'
23472 3' -63.4 NC_005259.1 + 25050 0.66 0.32203
Target:  5'- gGCCGguaGCCCguuuucaggcaagGGUGGCGCUGCcaccGCCGc -3'
miRNA:   3'- -CGGU---UGGG-------------CCGCCGCGACGac--CGGUu -5'
23472 3' -63.4 NC_005259.1 + 25929 0.66 0.337271
Target:  5'- cGCCggUCCGGUGaGCGCacgccggUGCccGGCCc- -3'
miRNA:   3'- -CGGuuGGGCCGC-CGCG-------ACGa-CCGGuu -5'
23472 3' -63.4 NC_005259.1 + 26509 0.68 0.260496
Target:  5'- cGCC-GCCCGGCGagaagaGCGCggugagcaGCUuGGCCAc -3'
miRNA:   3'- -CGGuUGGGCCGC------CGCGa-------CGA-CCGGUu -5'
23472 3' -63.4 NC_005259.1 + 26816 0.66 0.330348
Target:  5'- gGCCggUaCCGGCGGUGgUGCcggGGCgGu -3'
miRNA:   3'- -CGGuuG-GGCCGCCGCgACGa--CCGgUu -5'
23472 3' -63.4 NC_005259.1 + 28331 0.66 0.338824
Target:  5'- uGCCGucCuuGGCGGCGaaaucgaggccacggUGCUGGCUg- -3'
miRNA:   3'- -CGGUu-GggCCGCCGCg--------------ACGACCGGuu -5'
23472 3' -63.4 NC_005259.1 + 30659 0.69 0.198074
Target:  5'- aGCCGcagcacaucGCCCGGCGa-GUaGCUGGCCAc -3'
miRNA:   3'- -CGGU---------UGGGCCGCcgCGaCGACCGGUu -5'
23472 3' -63.4 NC_005259.1 + 30765 0.67 0.293807
Target:  5'- uGCCGACgCCGGUGGCaCcGCUG-CCGu -3'
miRNA:   3'- -CGGUUG-GGCCGCCGcGaCGACcGGUu -5'
23472 3' -63.4 NC_005259.1 + 32556 0.68 0.248058
Target:  5'- gGCCGcCCCGGCGaGCGCggggauagcGUUGGgCAGc -3'
miRNA:   3'- -CGGUuGGGCCGC-CGCGa--------CGACCgGUU- -5'
23472 3' -63.4 NC_005259.1 + 34022 0.7 0.190164
Target:  5'- uCCGGCCuCGGCGGCGUgcgucggcgcguucuUGUUGGCa-- -3'
miRNA:   3'- cGGUUGG-GCCGCCGCG---------------ACGACCGguu -5'
23472 3' -63.4 NC_005259.1 + 34065 0.67 0.280098
Target:  5'- uCCGACCaCGGCGGCGgUGUccacacguaGGCCc- -3'
miRNA:   3'- cGGUUGG-GCCGCCGCgACGa--------CCGGuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.