miRNA display CGI


Results 21 - 38 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23472 3' -63.4 NC_005259.1 + 42494 0.67 0.286888
Target:  5'- aGCCGugACCCGucCGGCGgUG-UGGCCAGc -3'
miRNA:   3'- -CGGU--UGGGCc-GCCGCgACgACCGGUU- -5'
23472 3' -63.4 NC_005259.1 + 34065 0.67 0.280098
Target:  5'- uCCGACCaCGGCGGCGgUGUccacacguaGGCCc- -3'
miRNA:   3'- cGGUUGG-GCCGCCGCgACGa--------CCGGuu -5'
23472 3' -63.4 NC_005259.1 + 4108 0.67 0.273436
Target:  5'- uGCCaAACCuCGGCGGC-CUcGacgUGGCCAAg -3'
miRNA:   3'- -CGG-UUGG-GCCGCCGcGA-Cg--ACCGGUU- -5'
23472 3' -63.4 NC_005259.1 + 49422 0.67 0.266903
Target:  5'- uGCCAGCgagaaaCCGGCGaGCGCcGCcuUGGUCGg -3'
miRNA:   3'- -CGGUUG------GGCCGC-CGCGaCG--ACCGGUu -5'
23472 3' -63.4 NC_005259.1 + 26509 0.68 0.260496
Target:  5'- cGCC-GCCCGGCGagaagaGCGCggugagcaGCUuGGCCAc -3'
miRNA:   3'- -CGGuUGGGCCGC------CGCGa-------CGA-CCGGUu -5'
23472 3' -63.4 NC_005259.1 + 5717 0.68 0.254214
Target:  5'- gGCCAGCgCCGGaCGGCGgccauuCUcGC-GGCCAAg -3'
miRNA:   3'- -CGGUUG-GGCC-GCCGC------GA-CGaCCGGUU- -5'
23472 3' -63.4 NC_005259.1 + 60814 0.68 0.248058
Target:  5'- gGCCGGaaaUCGuCGGCGaUGCUGGCCAc -3'
miRNA:   3'- -CGGUUg--GGCcGCCGCgACGACCGGUu -5'
23472 3' -63.4 NC_005259.1 + 32556 0.68 0.248058
Target:  5'- gGCCGcCCCGGCGaGCGCggggauagcGUUGGgCAGc -3'
miRNA:   3'- -CGGUuGGGCCGC-CGCGa--------CGACCgGUU- -5'
23472 3' -63.4 NC_005259.1 + 15459 0.69 0.219111
Target:  5'- aUCAACCCguuGGCcaaGGCGCaacucucGCUGGCCAAc -3'
miRNA:   3'- cGGUUGGG---CCG---CCGCGa------CGACCGGUU- -5'
23472 3' -63.4 NC_005259.1 + 8591 0.69 0.219111
Target:  5'- cGCaCGAUCCGGCGGCcugaGUUGCuucaUGGUCAc -3'
miRNA:   3'- -CG-GUUGGGCCGCCG----CGACG----ACCGGUu -5'
23472 3' -63.4 NC_005259.1 + 67229 0.69 0.203162
Target:  5'- uGCCGACCaCGGCGGUGUagggguugaGCggGGCCu- -3'
miRNA:   3'- -CGGUUGG-GCCGCCGCGa--------CGa-CCGGuu -5'
23472 3' -63.4 NC_005259.1 + 47943 0.69 0.198074
Target:  5'- aGCCGAUgaCGGCGGUGCcGaUGGCCGc -3'
miRNA:   3'- -CGGUUGg-GCCGCCGCGaCgACCGGUu -5'
23472 3' -63.4 NC_005259.1 + 30659 0.69 0.198074
Target:  5'- aGCCGcagcacaucGCCCGGCGa-GUaGCUGGCCAc -3'
miRNA:   3'- -CGGU---------UGGGCCGCcgCGaCGACCGGUu -5'
23472 3' -63.4 NC_005259.1 + 34022 0.7 0.190164
Target:  5'- uCCGGCCuCGGCGGCGUgcgucggcgcguucuUGUUGGCa-- -3'
miRNA:   3'- cGGUUGG-GCCGCCGCG---------------ACGACCGguu -5'
23472 3' -63.4 NC_005259.1 + 8772 0.71 0.161246
Target:  5'- gGCCAGCgCGGCGGUGaugaGCUcGGCCc- -3'
miRNA:   3'- -CGGUUGgGCCGCCGCga--CGA-CCGGuu -5'
23472 3' -63.4 NC_005259.1 + 14209 0.71 0.153055
Target:  5'- gGCCGggaucaacuACCCGGCGcGCGUcgUGCguaucgGGCCGGg -3'
miRNA:   3'- -CGGU---------UGGGCCGC-CGCG--ACGa-----CCGGUU- -5'
23472 3' -63.4 NC_005259.1 + 55888 0.71 0.145243
Target:  5'- cCCGACCuCGGgGGuCGCgccggggucGCUGGCCAGa -3'
miRNA:   3'- cGGUUGG-GCCgCC-GCGa--------CGACCGGUU- -5'
23472 3' -63.4 NC_005259.1 + 59506 0.73 0.117516
Target:  5'- uGUCAccGCCCGGCGaauUGCUGUUGGCCu- -3'
miRNA:   3'- -CGGU--UGGGCCGCc--GCGACGACCGGuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.