miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23473 5' -51.3 NC_005259.1 + 28006 0.74 0.546086
Target:  5'- gCCGGggcGGGGucGCCGggGUUGCgCGc -3'
miRNA:   3'- -GGCCaa-CUCCuuUGGCuuCAACG-GCa -5'
23473 5' -51.3 NC_005259.1 + 46529 0.72 0.666739
Target:  5'- gCCGGUcGGGGAucGCCGAgaucuGGUcGCCGa -3'
miRNA:   3'- -GGCCAaCUCCUu-UGGCU-----UCAaCGGCa -5'
23473 5' -51.3 NC_005259.1 + 54720 0.71 0.710326
Target:  5'- cCUGGUacAGGAcauAGCCGAGGcUGCCGa -3'
miRNA:   3'- -GGCCAacUCCU---UUGGCUUCaACGGCa -5'
23473 5' -51.3 NC_005259.1 + 57223 0.71 0.742244
Target:  5'- aCCGGUUGucGGggUCGGAgauccacgucGUUGCCGg -3'
miRNA:   3'- -GGCCAACucCUuuGGCUU----------CAACGGCa -5'
23473 5' -51.3 NC_005259.1 + 18839 0.7 0.773154
Target:  5'- cCCGG-UGAGGGucucGCCGG---UGCCGUg -3'
miRNA:   3'- -GGCCaACUCCUu---UGGCUucaACGGCA- -5'
23473 5' -51.3 NC_005259.1 + 38432 0.69 0.821593
Target:  5'- uUGGUcGAGucGAGACCGAAaaUGCCGUg -3'
miRNA:   3'- gGCCAaCUC--CUUUGGCUUcaACGGCA- -5'
23473 5' -51.3 NC_005259.1 + 26809 0.69 0.830721
Target:  5'- cCCGGUUGGccGGu-ACCGgcGguggUGCCGg -3'
miRNA:   3'- -GGCCAACU--CCuuUGGCuuCa---ACGGCa -5'
23473 5' -51.3 NC_005259.1 + 67249 0.68 0.865041
Target:  5'- -gGGUUGAGcGggGCCucGGgcaGCCGUg -3'
miRNA:   3'- ggCCAACUC-CuuUGGcuUCaa-CGGCA- -5'
23473 5' -51.3 NC_005259.1 + 64421 0.67 0.902419
Target:  5'- gCCG--UGAGGGAucGCCGAcgAGcUGCCGg -3'
miRNA:   3'- -GGCcaACUCCUU--UGGCU--UCaACGGCa -5'
23473 5' -51.3 NC_005259.1 + 42360 0.67 0.902419
Target:  5'- gCCGGUagacaugaucguUGAGGAAGgCGGGcagGCCGg -3'
miRNA:   3'- -GGCCA------------ACUCCUUUgGCUUcaaCGGCa -5'
23473 5' -51.3 NC_005259.1 + 794 0.67 0.909099
Target:  5'- cUCGGUUG-GGugGCC-AAGggGCCGg -3'
miRNA:   3'- -GGCCAACuCCuuUGGcUUCaaCGGCa -5'
23473 5' -51.3 NC_005259.1 + 43959 0.67 0.921632
Target:  5'- aUGGgcGGGGccgccgccuGACCGAGGgcggUGCCGa -3'
miRNA:   3'- gGCCaaCUCCu--------UUGGCUUCa---ACGGCa -5'
23473 5' -51.3 NC_005259.1 + 43068 0.67 0.927482
Target:  5'- gUCGG-UGAGGAAcgCGAGcccGUUGCCGc -3'
miRNA:   3'- -GGCCaACUCCUUugGCUU---CAACGGCa -5'
23473 5' -51.3 NC_005259.1 + 31188 0.66 0.938349
Target:  5'- gUCGGc-GAGGAugccGCCGAAGaucgggaUGCCGUu -3'
miRNA:   3'- -GGCCaaCUCCUu---UGGCUUCa------ACGGCA- -5'
23473 5' -51.3 NC_005259.1 + 31718 0.66 0.943367
Target:  5'- gCCGGUcuucucUGAGGuGACCGcgccUGCCGc -3'
miRNA:   3'- -GGCCA------ACUCCuUUGGCuucaACGGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.