miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23474 5' -56.9 NC_005259.1 + 36837 0.66 0.720249
Target:  5'- -gGUUGuGCACGUGCuGacgccGCCCGCu- -3'
miRNA:   3'- cgCAACuCGUGCACGcCa----CGGGUGcu -5'
23474 5' -56.9 NC_005259.1 + 33727 0.69 0.519812
Target:  5'- cGCGaUGAuGuCGCGUggaGCGGUGUgCACGAg -3'
miRNA:   3'- -CGCaACU-C-GUGCA---CGCCACGgGUGCU- -5'
23474 5' -56.9 NC_005259.1 + 55222 0.68 0.550836
Target:  5'- aCG-UGAGCAuCGUGUucGaUGCCCACGAc -3'
miRNA:   3'- cGCaACUCGU-GCACG--CcACGGGUGCU- -5'
23474 5' -56.9 NC_005259.1 + 67441 0.68 0.561307
Target:  5'- cGC-UUGAGCGCGUcGgGGaUGCCCuuuucgGCGAu -3'
miRNA:   3'- -CGcAACUCGUGCA-CgCC-ACGGG------UGCU- -5'
23474 5' -56.9 NC_005259.1 + 10234 0.68 0.571831
Target:  5'- gGCGcucacUGAGCACG-GCGGUGUgCuuGAu -3'
miRNA:   3'- -CGCa----ACUCGUGCaCGCCACGgGugCU- -5'
23474 5' -56.9 NC_005259.1 + 41110 0.68 0.571831
Target:  5'- gGCGguaUGAcgAUGUcgGCGGUGCCCGCGu -3'
miRNA:   3'- -CGCa--ACUcgUGCA--CGCCACGGGUGCu -5'
23474 5' -56.9 NC_005259.1 + 27395 0.68 0.593013
Target:  5'- gGCGgUGucGGCAgCGgcgGCagcucGGUGCCCGCGAg -3'
miRNA:   3'- -CGCaAC--UCGU-GCa--CG-----CCACGGGUGCU- -5'
23474 5' -56.9 NC_005259.1 + 35116 0.67 0.614318
Target:  5'- cCGUUG-GCcCG-GCGGUGuCCCACa- -3'
miRNA:   3'- cGCAACuCGuGCaCGCCAC-GGGUGcu -5'
23474 5' -56.9 NC_005259.1 + 36939 0.67 0.624997
Target:  5'- aGUGUUGcuGuCACc-GgGGUGCCCGCGAg -3'
miRNA:   3'- -CGCAACu-C-GUGcaCgCCACGGGUGCU- -5'
23474 5' -56.9 NC_005259.1 + 31242 0.69 0.519812
Target:  5'- --aUUGGGCGCG-GCGGUGCCgccccaCACGc -3'
miRNA:   3'- cgcAACUCGUGCaCGCCACGG------GUGCu -5'
23474 5' -56.9 NC_005259.1 + 20518 0.69 0.499514
Target:  5'- gGUGUcccGAGCACGggUGCGcUGCCCGCa- -3'
miRNA:   3'- -CGCAa--CUCGUGC--ACGCcACGGGUGcu -5'
23474 5' -56.9 NC_005259.1 + 8540 0.69 0.499514
Target:  5'- gGCGaUGAGCuCG-GCGGUguaGCCCAUGc -3'
miRNA:   3'- -CGCaACUCGuGCaCGCCA---CGGGUGCu -5'
23474 5' -56.9 NC_005259.1 + 44397 0.74 0.270909
Target:  5'- uCGccGAGCACGU-CGGUGCCCGCc- -3'
miRNA:   3'- cGCaaCUCGUGCAcGCCACGGGUGcu -5'
23474 5' -56.9 NC_005259.1 + 59136 0.72 0.36929
Target:  5'- aGCGUcGAGCuCGgcaGCGGUGCCgGgGAg -3'
miRNA:   3'- -CGCAaCUCGuGCa--CGCCACGGgUgCU- -5'
23474 5' -56.9 NC_005259.1 + 44138 0.71 0.403211
Target:  5'- uGCGUUGAGCgaggugaACGUGCGGUcgaGCagCGCGc -3'
miRNA:   3'- -CGCAACUCG-------UGCACGCCA---CGg-GUGCu -5'
23474 5' -56.9 NC_005259.1 + 37502 0.71 0.404107
Target:  5'- gGCGgUGAGCACGaUGC--UGCCCgACGAg -3'
miRNA:   3'- -CGCaACUCGUGC-ACGccACGGG-UGCU- -5'
23474 5' -56.9 NC_005259.1 + 68704 0.7 0.440926
Target:  5'- gGCGggcAGCGCGU-CGGUGCCCGaGAa -3'
miRNA:   3'- -CGCaacUCGUGCAcGCCACGGGUgCU- -5'
23474 5' -56.9 NC_005259.1 + 62003 0.7 0.469755
Target:  5'- ---aUGGGCAcCGUGCGGUGuaCCCGCu- -3'
miRNA:   3'- cgcaACUCGU-GCACGCCAC--GGGUGcu -5'
23474 5' -56.9 NC_005259.1 + 10699 0.7 0.479577
Target:  5'- cCGUUGAGCAUG-GaCGGguaguugGCCCGCa- -3'
miRNA:   3'- cGCAACUCGUGCaC-GCCa------CGGGUGcu -5'
23474 5' -56.9 NC_005259.1 + 38918 0.69 0.498509
Target:  5'- aGCGcUUGAGCACGUcgguguuGCuGUGCCCGg-- -3'
miRNA:   3'- -CGC-AACUCGUGCA-------CGcCACGGGUgcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.