miRNA display CGI


Results 41 - 60 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23476 3' -58.3 NC_005259.1 + 30125 0.67 0.599683
Target:  5'- uUGCCGuccGGCUgCGAUACCUcgggcagcucgaccgGGCCGCCu -3'
miRNA:   3'- cGCGGC---CUGGgGCUAUGGG---------------UUGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 12293 0.67 0.620588
Target:  5'- cCGCCGcGCCUCGAUGCgggCAaugucggugcgcaccGCCGCCa -3'
miRNA:   3'- cGCGGCcUGGGGCUAUGg--GU---------------UGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 7285 0.67 0.578878
Target:  5'- nCGCCccGCCCCcaagcacuacaauugGGUGCCCGaguucACCGCCg -3'
miRNA:   3'- cGCGGccUGGGG---------------CUAUGGGU-----UGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 50093 0.67 0.605947
Target:  5'- uCGCCGaugguGCgCCCGAgguUGCCCGuacgcacgggcACCGCCa -3'
miRNA:   3'- cGCGGCc----UG-GGGCU---AUGGGU-----------UGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 58168 0.67 0.616403
Target:  5'- gGCGCacgGGAUCUCGAcgcacguCUUGACCGCCg -3'
miRNA:   3'- -CGCGg--CCUGGGGCUau-----GGGUUGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 35276 0.67 0.564406
Target:  5'- cGCGCCGGGguCgCCGAUguGCCCcuugaaguaGAUgACCg -3'
miRNA:   3'- -CGCGGCCU--GgGGCUA--UGGG---------UUGgUGG- -5'
23476 3' -58.3 NC_005259.1 + 56311 0.67 0.605947
Target:  5'- -gGCCGGACCCucgucgccguCGAgcaAUCCGACUuCCu -3'
miRNA:   3'- cgCGGCCUGGG----------GCUa--UGGGUUGGuGG- -5'
23476 3' -58.3 NC_005259.1 + 64685 0.67 0.564406
Target:  5'- cCGCCGcGCCgCCGAgcgaUACCCAcauaccgaugcACCACg -3'
miRNA:   3'- cGCGGCcUGG-GGCU----AUGGGU-----------UGGUGg -5'
23476 3' -58.3 NC_005259.1 + 13889 0.67 0.616403
Target:  5'- gGUGacCCGaGACCCCGAcaACCaaCAACCACa -3'
miRNA:   3'- -CGC--GGC-CUGGGGCUa-UGG--GUUGGUGg -5'
23476 3' -58.3 NC_005259.1 + 33051 0.67 0.5737
Target:  5'- uUGCCGGGgucgcucgcgugcUUCUGGUAUCCGcugGCCACCu -3'
miRNA:   3'- cGCGGCCU-------------GGGGCUAUGGGU---UGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 15097 0.68 0.523652
Target:  5'- uGCGCCgcaGGGCCaUCGAguggACCUugGACCAUCc -3'
miRNA:   3'- -CGCGG---CCUGG-GGCUa---UGGG--UUGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 37012 0.68 0.517632
Target:  5'- cGCGCCcgccggGGAacaugacaaugucgaUCuuGGUGCCCG-CCACCg -3'
miRNA:   3'- -CGCGG------CCU---------------GGggCUAUGGGUuGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 37241 0.68 0.522647
Target:  5'- cGUGCCGGauuggcuGCCgCCGuUGCCaggcuugaGGCCGCCc -3'
miRNA:   3'- -CGCGGCC-------UGG-GGCuAUGGg-------UUGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 25095 0.68 0.555153
Target:  5'- uGCGCCc-GCCCCGAgcaagggcaaggucgACCCcGCCgACCu -3'
miRNA:   3'- -CGCGGccUGGGGCUa--------------UGGGuUGG-UGG- -5'
23476 3' -58.3 NC_005259.1 + 66852 0.68 0.554127
Target:  5'- cCGCaCGGGCCaCCGAUcgGCCUuguuCgCACCg -3'
miRNA:   3'- cGCG-GCCUGG-GGCUA--UGGGuu--G-GUGG- -5'
23476 3' -58.3 NC_005259.1 + 61949 0.68 0.543904
Target:  5'- gGUGCCgGGGCCaCCGcaGCCUcACgCGCCg -3'
miRNA:   3'- -CGCGG-CCUGG-GGCuaUGGGuUG-GUGG- -5'
23476 3' -58.3 NC_005259.1 + 49441 0.68 0.543904
Target:  5'- aGCGCCGccuuggucGGCagCCgGAUGCCCAGCagguCGCCc -3'
miRNA:   3'- -CGCGGC--------CUG--GGgCUAUGGGUUG----GUGG- -5'
23476 3' -58.3 NC_005259.1 + 13096 0.68 0.543904
Target:  5'- gGUGCCaccGACCCCGGcccGCUCGGCgGCUa -3'
miRNA:   3'- -CGCGGc--CUGGGGCUa--UGGGUUGgUGG- -5'
23476 3' -58.3 NC_005259.1 + 41405 0.68 0.533744
Target:  5'- cGCGCCGcucgggguGCCCaCGAUguGCaCgGGCCGCCa -3'
miRNA:   3'- -CGCGGCc-------UGGG-GCUA--UG-GgUUGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 49644 0.68 0.513633
Target:  5'- cGCGUCGGcgauggcgGCCUCGAUACgC-GCCugCu -3'
miRNA:   3'- -CGCGGCC--------UGGGGCUAUGgGuUGGugG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.