miRNA display CGI


Results 61 - 80 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23476 3' -58.3 NC_005259.1 + 25095 0.68 0.555153
Target:  5'- uGCGCCc-GCCCCGAgcaagggcaaggucgACCCcGCCgACCu -3'
miRNA:   3'- -CGCGGccUGGGGCUa--------------UGGGuUGG-UGG- -5'
23476 3' -58.3 NC_005259.1 + 66852 0.68 0.554127
Target:  5'- cCGCaCGGGCCaCCGAUcgGCCUuguuCgCACCg -3'
miRNA:   3'- cGCG-GCCUGG-GGCUA--UGGGuu--G-GUGG- -5'
23476 3' -58.3 NC_005259.1 + 50412 0.68 0.554127
Target:  5'- cGCGCCGGuGCCuuGAccgGCUCGGgCAgCg -3'
miRNA:   3'- -CGCGGCC-UGGggCUa--UGGGUUgGUgG- -5'
23476 3' -58.3 NC_005259.1 + 48501 0.68 0.554127
Target:  5'- cGCGCUugaGGGCCgCGAcUugCCGcACUGCCg -3'
miRNA:   3'- -CGCGG---CCUGGgGCU-AugGGU-UGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 3862 0.68 0.554127
Target:  5'- aCGCCGGucgagcGCCUCGA-GCCC-ACC-CCg -3'
miRNA:   3'- cGCGGCC------UGGGGCUaUGGGuUGGuGG- -5'
23476 3' -58.3 NC_005259.1 + 61949 0.68 0.543904
Target:  5'- gGUGCCgGGGCCaCCGcaGCCUcACgCGCCg -3'
miRNA:   3'- -CGCGG-CCUGG-GGCuaUGGGuUG-GUGG- -5'
23476 3' -58.3 NC_005259.1 + 49441 0.68 0.543904
Target:  5'- aGCGCCGccuuggucGGCagCCgGAUGCCCAGCagguCGCCc -3'
miRNA:   3'- -CGCGGC--------CUG--GGgCUAUGGGUUG----GUGG- -5'
23476 3' -58.3 NC_005259.1 + 13096 0.68 0.543904
Target:  5'- gGUGCCaccGACCCCGGcccGCUCGGCgGCUa -3'
miRNA:   3'- -CGCGGc--CUGGGGCUa--UGGGUUGgUGG- -5'
23476 3' -58.3 NC_005259.1 + 5415 0.69 0.474402
Target:  5'- cGCGCUGGccGCCacguCGAggucugcGCCCGcuGCCGCCg -3'
miRNA:   3'- -CGCGGCC--UGGg---GCUa------UGGGU--UGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 743 0.69 0.474402
Target:  5'- gGUGCCuacGCCgCCGGUGCCUAccgcguCCACCg -3'
miRNA:   3'- -CGCGGcc-UGG-GGCUAUGGGUu-----GGUGG- -5'
23476 3' -58.3 NC_005259.1 + 24792 0.69 0.474402
Target:  5'- uGCGCagcaGGGCCaagaCCGAggugcCCCGGCaCGCCg -3'
miRNA:   3'- -CGCGg---CCUGG----GGCUau---GGGUUG-GUGG- -5'
23476 3' -58.3 NC_005259.1 + 17704 0.69 0.474402
Target:  5'- uUGUCGG-UCgCGAcUACCCGAUCACCg -3'
miRNA:   3'- cGCGGCCuGGgGCU-AUGGGUUGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 5956 0.69 0.474402
Target:  5'- -aGCgGGACuUCUGcgGgCCGACCACCa -3'
miRNA:   3'- cgCGgCCUG-GGGCuaUgGGUUGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 10063 0.69 0.481163
Target:  5'- aCGCCGGuuuGCCCucgcaggacgccgaCGAguagACCCcgaGGCCACCg -3'
miRNA:   3'- cGCGGCC---UGGG--------------GCUa---UGGG---UUGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 35488 0.69 0.484075
Target:  5'- -gGCCGaacGAUCCUGGguugGCCCcguuGCCGCCg -3'
miRNA:   3'- cgCGGC---CUGGGGCUa---UGGGu---UGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 6225 0.69 0.49188
Target:  5'- cGCGCCGacaccguGACCgugggcgagugggUCGAUAuCCCGcACCGCCg -3'
miRNA:   3'- -CGCGGC-------CUGG-------------GGCUAU-GGGU-UGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 7671 0.69 0.49384
Target:  5'- aGCGCCccGCCUCGuggggugGCCCGuacgucugcACCACCa -3'
miRNA:   3'- -CGCGGccUGGGGCua-----UGGGU---------UGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 20699 0.69 0.496787
Target:  5'- cGCGCuCGGuggucgaagguuucACCCCGccgcgcgaaaugacGUAuugguccggccauCCCGACCACCg -3'
miRNA:   3'- -CGCG-GCC--------------UGGGGC--------------UAU-------------GGGUUGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 46340 0.69 0.48797
Target:  5'- cGCGCaccgcuuguagguucUGGGCCgCGAUggcaccGCCCGGCC-CCa -3'
miRNA:   3'- -CGCG---------------GCCUGGgGCUA------UGGGUUGGuGG- -5'
23476 3' -58.3 NC_005259.1 + 13563 0.69 0.49384
Target:  5'- cCGCCGaccccGCCCCGAcACCCGaggACgACCc -3'
miRNA:   3'- cGCGGCc----UGGGGCUaUGGGU---UGgUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.