Results 81 - 100 of 160 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23476 | 3' | -58.3 | NC_005259.1 | + | 13952 | 0.69 | 0.474402 |
Target: 5'- aCGCCGGACcauCCCGGcauCCCGAggcCCGCg -3' miRNA: 3'- cGCGGCCUG---GGGCUau-GGGUU---GGUGg -5' |
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23476 | 3' | -58.3 | NC_005259.1 | + | 5415 | 0.69 | 0.474402 |
Target: 5'- cGCGCUGGccGCCacguCGAggucugcGCCCGcuGCCGCCg -3' miRNA: 3'- -CGCGGCC--UGGg---GCUa------UGGGU--UGGUGG- -5' |
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23476 | 3' | -58.3 | NC_005259.1 | + | 56856 | 0.69 | 0.445057 |
Target: 5'- cGUGuuGGucagugcgagcacACCCuCGAUGagCCGACCGCCa -3' miRNA: 3'- -CGCggCC-------------UGGG-GCUAUg-GGUUGGUGG- -5' |
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23476 | 3' | -58.3 | NC_005259.1 | + | 28630 | 0.69 | 0.445988 |
Target: 5'- -gGCCaaGGCCaCCGGUGCCgAcACCGCCg -3' miRNA: 3'- cgCGGc-CUGG-GGCUAUGGgU-UGGUGG- -5' |
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23476 | 3' | -58.3 | NC_005259.1 | + | 44981 | 0.69 | 0.445988 |
Target: 5'- aGgGCCGGugCgacugCCGAgGCaccgCCGACCGCCg -3' miRNA: 3'- -CgCGGCCugG-----GGCUaUG----GGUUGGUGG- -5' |
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23476 | 3' | -58.3 | NC_005259.1 | + | 35523 | 0.69 | 0.451596 |
Target: 5'- cCGCCGGGCaCaccgcccgccgucgCCGAUccGCCCGaugacuuGCCGCCg -3' miRNA: 3'- cGCGGCCUG-G--------------GGCUA--UGGGU-------UGGUGG- -5' |
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23476 | 3' | -58.3 | NC_005259.1 | + | 68576 | 0.69 | 0.455356 |
Target: 5'- -aGgUGGACCUCG-UAUCCGgcgGCCACCg -3' miRNA: 3'- cgCgGCCUGGGGCuAUGGGU---UGGUGG- -5' |
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23476 | 3' | -58.3 | NC_005259.1 | + | 56388 | 0.69 | 0.455356 |
Target: 5'- cGCGUCGGcugaucgUCUCGAUgguGCCCGGCCcGCCg -3' miRNA: 3'- -CGCGGCCu------GGGGCUA---UGGGUUGG-UGG- -5' |
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23476 | 3' | -58.3 | NC_005259.1 | + | 35727 | 0.69 | 0.455356 |
Target: 5'- cCGCCcGACgaCCCGGcgcUGCCCGGCC-CCa -3' miRNA: 3'- cGCGGcCUG--GGGCU---AUGGGUUGGuGG- -5' |
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23476 | 3' | -58.3 | NC_005259.1 | + | 48028 | 0.69 | 0.459132 |
Target: 5'- cGCGCCcacgauguugaccACCCCGGUGgCCAcggcggguagcGCCGCCg -3' miRNA: 3'- -CGCGGcc-----------UGGGGCUAUgGGU-----------UGGUGG- -5' |
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23476 | 3' | -58.3 | NC_005259.1 | + | 743 | 0.69 | 0.474402 |
Target: 5'- gGUGCCuacGCCgCCGGUGCCUAccgcguCCACCg -3' miRNA: 3'- -CGCGGcc-UGG-GGCUAUGGGUu-----GGUGG- -5' |
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23476 | 3' | -58.3 | NC_005259.1 | + | 24792 | 0.69 | 0.474402 |
Target: 5'- uGCGCagcaGGGCCaagaCCGAggugcCCCGGCaCGCCg -3' miRNA: 3'- -CGCGg---CCUGG----GGCUau---GGGUUG-GUGG- -5' |
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23476 | 3' | -58.3 | NC_005259.1 | + | 5956 | 0.69 | 0.474402 |
Target: 5'- -aGCgGGACuUCUGcgGgCCGACCACCa -3' miRNA: 3'- cgCGgCCUG-GGGCuaUgGGUUGGUGG- -5' |
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23476 | 3' | -58.3 | NC_005259.1 | + | 55961 | 0.69 | 0.464828 |
Target: 5'- uGUG-CGGAcauccCCUCGAUGCCCucACCAUCa -3' miRNA: 3'- -CGCgGCCU-----GGGGCUAUGGGu-UGGUGG- -5' |
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23476 | 3' | -58.3 | NC_005259.1 | + | 67757 | 0.69 | 0.464828 |
Target: 5'- -gGCC--GCCCCGGccaCCGGCCACCg -3' miRNA: 3'- cgCGGccUGGGGCUaugGGUUGGUGG- -5' |
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23476 | 3' | -58.3 | NC_005259.1 | + | 66654 | 0.69 | 0.464828 |
Target: 5'- uGCuGCCGGucggcgguGCUgCGAUGCUCAucguGCCGCCc -3' miRNA: 3'- -CG-CGGCC--------UGGgGCUAUGGGU----UGGUGG- -5' |
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23476 | 3' | -58.3 | NC_005259.1 | + | 56068 | 0.7 | 0.418549 |
Target: 5'- gGCGUCGaGACCgucgagcagaUCGGUGCUCGucgggGCCACCg -3' miRNA: 3'- -CGCGGC-CUGG----------GGCUAUGGGU-----UGGUGG- -5' |
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23476 | 3' | -58.3 | NC_005259.1 | + | 66267 | 0.7 | 0.427582 |
Target: 5'- cGCGCCGGGCggCG--GCUCAcgccGCCACCa -3' miRNA: 3'- -CGCGGCCUGggGCuaUGGGU----UGGUGG- -5' |
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23476 | 3' | -58.3 | NC_005259.1 | + | 31511 | 0.7 | 0.427582 |
Target: 5'- cGCGCCGGACUUgcuugaucggggUGGUGCCgugauaGAUCGCCu -3' miRNA: 3'- -CGCGGCCUGGG------------GCUAUGGg-----UUGGUGG- -5' |
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23476 | 3' | -58.3 | NC_005259.1 | + | 68713 | 0.7 | 0.427582 |
Target: 5'- cGCGUCGGugCCCGAgaaCUGGggUCGCCg -3' miRNA: 3'- -CGCGGCCugGGGCUaugGGUU--GGUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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