miRNA display CGI


Results 41 - 60 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23476 3' -58.3 NC_005259.1 + 68744 0.71 0.350659
Target:  5'- uUGCCGagcucGACCCCGGcgACCUcGCCAUCg -3'
miRNA:   3'- cGCGGC-----CUGGGGCUa-UGGGuUGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 26094 0.71 0.350659
Target:  5'- cCGCCGaGAagacCCCCGAgcagACCgCcGCCGCCg -3'
miRNA:   3'- cGCGGC-CU----GGGGCUa---UGG-GuUGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 38934 0.71 0.358705
Target:  5'- gGUGuuGcuGugCCCGGUGCCgCuGCCGCCg -3'
miRNA:   3'- -CGCggC--CugGGGCUAUGG-GuUGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 23717 0.71 0.358705
Target:  5'- cGCGCCGGACggUUCGGUGCUCAcgugggacgGCgACCc -3'
miRNA:   3'- -CGCGGCCUG--GGGCUAUGGGU---------UGgUGG- -5'
23476 3' -58.3 NC_005259.1 + 46082 0.71 0.358705
Target:  5'- cCGCCGGGgCgagCGGUGCCuCAACCACg -3'
miRNA:   3'- cGCGGCCUgGg--GCUAUGG-GUUGGUGg -5'
23476 3' -58.3 NC_005259.1 + 48131 0.71 0.358705
Target:  5'- cCGCCucGACCaCCGccgcCCCGGCCACCa -3'
miRNA:   3'- cGCGGc-CUGG-GGCuau-GGGUUGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 9534 0.71 0.366879
Target:  5'- cCGCCGGGUCaCCGGagagcUGCCCGGCCucgACCg -3'
miRNA:   3'- cGCGGCCUGG-GGCU-----AUGGGUUGG---UGG- -5'
23476 3' -58.3 NC_005259.1 + 51455 0.71 0.381913
Target:  5'- cGCGCCGauagagcuuguuGCCCuCGGcgACCCAcACCGCCg -3'
miRNA:   3'- -CGCGGCc-----------UGGG-GCUa-UGGGU-UGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 9631 0.71 0.392161
Target:  5'- cGCGCCGGugCCC-----UCGAUCACCu -3'
miRNA:   3'- -CGCGGCCugGGGcuaugGGUUGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 17936 0.71 0.392161
Target:  5'- cGCGcCCGGugUCCacgccucACCCAagacGCCACCg -3'
miRNA:   3'- -CGC-GGCCugGGGcua----UGGGU----UGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 18465 0.71 0.392161
Target:  5'- cCGCCGG-UCCUGAgccgUGCCCGA-CGCCg -3'
miRNA:   3'- cGCGGCCuGGGGCU----AUGGGUUgGUGG- -5'
23476 3' -58.3 NC_005259.1 + 12188 0.7 0.400836
Target:  5'- cUGCCGGACCgUggucguguagaGAUGCaCCGGCgCACCg -3'
miRNA:   3'- cGCGGCCUGGgG-----------CUAUG-GGUUG-GUGG- -5'
23476 3' -58.3 NC_005259.1 + 48915 0.7 0.400836
Target:  5'- aGCuGCUGGGCCugaCCGAcGCCacgcacaaGGCCACCg -3'
miRNA:   3'- -CG-CGGCCUGG---GGCUaUGGg-------UUGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 28975 0.7 0.400836
Target:  5'- gGUGCCGaGGCCgCGAgcGCCCGcuACgGCCa -3'
miRNA:   3'- -CGCGGC-CUGGgGCUa-UGGGU--UGgUGG- -5'
23476 3' -58.3 NC_005259.1 + 44429 0.7 0.4061
Target:  5'- aGCGCCGauaccGGCCCCGAagauguucuugagACCgGggauGCCGCCg -3'
miRNA:   3'- -CGCGGC-----CUGGGGCUa------------UGGgU----UGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 44171 0.7 0.409633
Target:  5'- cGCGCCGGugUCgGAgaaaAgUCGACCGCUc -3'
miRNA:   3'- -CGCGGCCugGGgCUa---UgGGUUGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 10817 0.7 0.418549
Target:  5'- uGCGCaCGGugC-CGAUggacacGCCC-ACCGCCu -3'
miRNA:   3'- -CGCG-GCCugGgGCUA------UGGGuUGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 19261 0.7 0.418549
Target:  5'- cUGCCGGGCcgCCCGAUGgaagUCaUGACCACCa -3'
miRNA:   3'- cGCGGCCUG--GGGCUAU----GG-GUUGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 56068 0.7 0.418549
Target:  5'- gGCGUCGaGACCgucgagcagaUCGGUGCUCGucgggGCCACCg -3'
miRNA:   3'- -CGCGGC-CUGG----------GGCUAUGGGU-----UGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 68713 0.7 0.427582
Target:  5'- cGCGUCGGugCCCGAgaaCUGGggUCGCCg -3'
miRNA:   3'- -CGCGGCCugGGGCUaugGGUU--GGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.