miRNA display CGI


Results 61 - 80 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23476 3' -58.3 NC_005259.1 + 31511 0.7 0.427582
Target:  5'- cGCGCCGGACUUgcuugaucggggUGGUGCCgugauaGAUCGCCu -3'
miRNA:   3'- -CGCGGCCUGGG------------GCUAUGGg-----UUGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 68713 0.7 0.427582
Target:  5'- cGCGUCGGugCCCGAgaaCUGGggUCGCCg -3'
miRNA:   3'- -CGCGGCCugGGGCUaugGGUU--GGUGG- -5'
23476 3' -58.3 NC_005259.1 + 34340 0.7 0.427582
Target:  5'- aGCGuuGGGgUUCGAcgugACCC-ACCGCCg -3'
miRNA:   3'- -CGCggCCUgGGGCUa---UGGGuUGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 2165 0.7 0.436729
Target:  5'- gGCGUCGaGCCgCCGGUugCCGaggucauggGCCGCUa -3'
miRNA:   3'- -CGCGGCcUGG-GGCUAugGGU---------UGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 56856 0.69 0.445057
Target:  5'- cGUGuuGGucagugcgagcacACCCuCGAUGagCCGACCGCCa -3'
miRNA:   3'- -CGCggCC-------------UGGG-GCUAUg-GGUUGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 44981 0.69 0.445988
Target:  5'- aGgGCCGGugCgacugCCGAgGCaccgCCGACCGCCg -3'
miRNA:   3'- -CgCGGCCugG-----GGCUaUG----GGUUGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 28630 0.69 0.445988
Target:  5'- -gGCCaaGGCCaCCGGUGCCgAcACCGCCg -3'
miRNA:   3'- cgCGGc-CUGG-GGCUAUGGgU-UGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 35523 0.69 0.451596
Target:  5'- cCGCCGGGCaCaccgcccgccgucgCCGAUccGCCCGaugacuuGCCGCCg -3'
miRNA:   3'- cGCGGCCUG-G--------------GGCUA--UGGGU-------UGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 68576 0.69 0.455356
Target:  5'- -aGgUGGACCUCG-UAUCCGgcgGCCACCg -3'
miRNA:   3'- cgCgGCCUGGGGCuAUGGGU---UGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 56388 0.69 0.455356
Target:  5'- cGCGUCGGcugaucgUCUCGAUgguGCCCGGCCcGCCg -3'
miRNA:   3'- -CGCGGCCu------GGGGCUA---UGGGUUGG-UGG- -5'
23476 3' -58.3 NC_005259.1 + 35727 0.69 0.455356
Target:  5'- cCGCCcGACgaCCCGGcgcUGCCCGGCC-CCa -3'
miRNA:   3'- cGCGGcCUG--GGGCU---AUGGGUUGGuGG- -5'
23476 3' -58.3 NC_005259.1 + 48028 0.69 0.459132
Target:  5'- cGCGCCcacgauguugaccACCCCGGUGgCCAcggcggguagcGCCGCCg -3'
miRNA:   3'- -CGCGGcc-----------UGGGGCUAUgGGU-----------UGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 67757 0.69 0.464828
Target:  5'- -gGCC--GCCCCGGccaCCGGCCACCg -3'
miRNA:   3'- cgCGGccUGGGGCUaugGGUUGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 55961 0.69 0.464828
Target:  5'- uGUG-CGGAcauccCCUCGAUGCCCucACCAUCa -3'
miRNA:   3'- -CGCgGCCU-----GGGGCUAUGGGu-UGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 66654 0.69 0.464828
Target:  5'- uGCuGCCGGucggcgguGCUgCGAUGCUCAucguGCCGCCc -3'
miRNA:   3'- -CG-CGGCC--------UGGgGCUAUGGGU----UGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 17704 0.69 0.474402
Target:  5'- uUGUCGG-UCgCGAcUACCCGAUCACCg -3'
miRNA:   3'- cGCGGCCuGGgGCU-AUGGGUUGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 24792 0.69 0.474402
Target:  5'- uGCGCagcaGGGCCaagaCCGAggugcCCCGGCaCGCCg -3'
miRNA:   3'- -CGCGg---CCUGG----GGCUau---GGGUUG-GUGG- -5'
23476 3' -58.3 NC_005259.1 + 743 0.69 0.474402
Target:  5'- gGUGCCuacGCCgCCGGUGCCUAccgcguCCACCg -3'
miRNA:   3'- -CGCGGcc-UGG-GGCUAUGGGUu-----GGUGG- -5'
23476 3' -58.3 NC_005259.1 + 5415 0.69 0.474402
Target:  5'- cGCGCUGGccGCCacguCGAggucugcGCCCGcuGCCGCCg -3'
miRNA:   3'- -CGCGGCC--UGGg---GCUa------UGGGU--UGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 13952 0.69 0.474402
Target:  5'- aCGCCGGACcauCCCGGcauCCCGAggcCCGCg -3'
miRNA:   3'- cGCGGCCUG---GGGCUau-GGGUU---GGUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.