Results 81 - 100 of 160 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23476 | 3' | -58.3 | NC_005259.1 | + | 17704 | 0.69 | 0.474402 |
Target: 5'- uUGUCGG-UCgCGAcUACCCGAUCACCg -3' miRNA: 3'- cGCGGCCuGGgGCU-AUGGGUUGGUGG- -5' |
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23476 | 3' | -58.3 | NC_005259.1 | + | 5956 | 0.69 | 0.474402 |
Target: 5'- -aGCgGGACuUCUGcgGgCCGACCACCa -3' miRNA: 3'- cgCGgCCUG-GGGCuaUgGGUUGGUGG- -5' |
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23476 | 3' | -58.3 | NC_005259.1 | + | 10063 | 0.69 | 0.481163 |
Target: 5'- aCGCCGGuuuGCCCucgcaggacgccgaCGAguagACCCcgaGGCCACCg -3' miRNA: 3'- cGCGGCC---UGGG--------------GCUa---UGGG---UUGGUGG- -5' |
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23476 | 3' | -58.3 | NC_005259.1 | + | 17770 | 0.69 | 0.483103 |
Target: 5'- cGCGCCGGGCCgagcgcaCCGAgcgUGCgC-ACCGCg -3' miRNA: 3'- -CGCGGCCUGG-------GGCU---AUGgGuUGGUGg -5' |
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23476 | 3' | -58.3 | NC_005259.1 | + | 30067 | 0.69 | 0.484075 |
Target: 5'- cUGCCGGACaacccacaCCCGAUG-UCGACCGCCc -3' miRNA: 3'- cGCGGCCUG--------GGGCUAUgGGUUGGUGG- -5' |
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23476 | 3' | -58.3 | NC_005259.1 | + | 35488 | 0.69 | 0.484075 |
Target: 5'- -gGCCGaacGAUCCUGGguugGCCCcguuGCCGCCg -3' miRNA: 3'- cgCGGC---CUGGGGCUa---UGGGu---UGGUGG- -5' |
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23476 | 3' | -58.3 | NC_005259.1 | + | 46340 | 0.69 | 0.48797 |
Target: 5'- cGCGCaccgcuuguagguucUGGGCCgCGAUggcaccGCCCGGCC-CCa -3' miRNA: 3'- -CGCG---------------GCCUGGgGCUA------UGGGUUGGuGG- -5' |
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23476 | 3' | -58.3 | NC_005259.1 | + | 6225 | 0.69 | 0.49188 |
Target: 5'- cGCGCCGacaccguGACCgugggcgagugggUCGAUAuCCCGcACCGCCg -3' miRNA: 3'- -CGCGGC-------CUGG-------------GGCUAU-GGGU-UGGUGG- -5' |
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23476 | 3' | -58.3 | NC_005259.1 | + | 23674 | 0.69 | 0.49384 |
Target: 5'- cCGCC-GACCCCGAgcagGCgCAcgcagACUACCg -3' miRNA: 3'- cGCGGcCUGGGGCUa---UGgGU-----UGGUGG- -5' |
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23476 | 3' | -58.3 | NC_005259.1 | + | 13563 | 0.69 | 0.49384 |
Target: 5'- cCGCCGaccccGCCCCGAcACCCGaggACgACCc -3' miRNA: 3'- cGCGGCc----UGGGGCUaUGGGU---UGgUGG- -5' |
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23476 | 3' | -58.3 | NC_005259.1 | + | 7671 | 0.69 | 0.49384 |
Target: 5'- aGCGCCccGCCUCGuggggugGCCCGuacgucugcACCACCa -3' miRNA: 3'- -CGCGGccUGGGGCua-----UGGGU---------UGGUGG- -5' |
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23476 | 3' | -58.3 | NC_005259.1 | + | 20699 | 0.69 | 0.496787 |
Target: 5'- cGCGCuCGGuggucgaagguuucACCCCGccgcgcgaaaugacGUAuugguccggccauCCCGACCACCg -3' miRNA: 3'- -CGCG-GCC--------------UGGGGC--------------UAU-------------GGGUUGGUGG- -5' |
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23476 | 3' | -58.3 | NC_005259.1 | + | 45217 | 0.68 | 0.503695 |
Target: 5'- cGCGuuG-AgCCCGAUGCCCug-CACCu -3' miRNA: 3'- -CGCggCcUgGGGCUAUGGGuugGUGG- -5' |
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23476 | 3' | -58.3 | NC_005259.1 | + | 19361 | 0.68 | 0.512636 |
Target: 5'- aCGCCGGgaucaagGCCCCGcUGaucaCCGGCC-CCa -3' miRNA: 3'- cGCGGCC-------UGGGGCuAUg---GGUUGGuGG- -5' |
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23476 | 3' | -58.3 | NC_005259.1 | + | 49644 | 0.68 | 0.513633 |
Target: 5'- cGCGUCGGcgauggcgGCCUCGAUACgC-GCCugCu -3' miRNA: 3'- -CGCGGCC--------UGGGGCUAUGgGuUGGugG- -5' |
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23476 | 3' | -58.3 | NC_005259.1 | + | 47298 | 0.68 | 0.513633 |
Target: 5'- uCGCCGGAcagcgaCCCCuugGCCUGACCGgCg -3' miRNA: 3'- cGCGGCCU------GGGGcuaUGGGUUGGUgG- -5' |
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23476 | 3' | -58.3 | NC_005259.1 | + | 37183 | 0.68 | 0.513633 |
Target: 5'- cGCGCgaGGACgagCUGcgGCCCuuGCCGCCa -3' miRNA: 3'- -CGCGg-CCUGg--GGCuaUGGGu-UGGUGG- -5' |
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23476 | 3' | -58.3 | NC_005259.1 | + | 37012 | 0.68 | 0.517632 |
Target: 5'- cGCGCCcgccggGGAacaugacaaugucgaUCuuGGUGCCCG-CCACCg -3' miRNA: 3'- -CGCGG------CCU---------------GGggCUAUGGGUuGGUGG- -5' |
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23476 | 3' | -58.3 | NC_005259.1 | + | 37241 | 0.68 | 0.522647 |
Target: 5'- cGUGCCGGauuggcuGCCgCCGuUGCCaggcuugaGGCCGCCc -3' miRNA: 3'- -CGCGGCC-------UGG-GGCuAUGGg-------UUGGUGG- -5' |
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23476 | 3' | -58.3 | NC_005259.1 | + | 33646 | 0.68 | 0.523652 |
Target: 5'- cGCGCuCGGGaaaucagCCGAgggUGCCCGGCCcACCc -3' miRNA: 3'- -CGCG-GCCUgg-----GGCU---AUGGGUUGG-UGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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