miRNA display CGI


Results 61 - 80 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23476 3' -58.3 NC_005259.1 + 33646 0.68 0.523652
Target:  5'- cGCGCuCGGGaaaucagCCGAgggUGCCCGGCCcACCc -3'
miRNA:   3'- -CGCG-GCCUgg-----GGCU---AUGGGUUGG-UGG- -5'
23476 3' -58.3 NC_005259.1 + 37241 0.68 0.522647
Target:  5'- cGUGCCGGauuggcuGCCgCCGuUGCCaggcuugaGGCCGCCc -3'
miRNA:   3'- -CGCGGCC-------UGG-GGCuAUGGg-------UUGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 37012 0.68 0.517632
Target:  5'- cGCGCCcgccggGGAacaugacaaugucgaUCuuGGUGCCCG-CCACCg -3'
miRNA:   3'- -CGCGG------CCU---------------GGggCUAUGGGUuGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 49644 0.68 0.513633
Target:  5'- cGCGUCGGcgauggcgGCCUCGAUACgC-GCCugCu -3'
miRNA:   3'- -CGCGGCC--------UGGGGCUAUGgGuUGGugG- -5'
23476 3' -58.3 NC_005259.1 + 47298 0.68 0.513633
Target:  5'- uCGCCGGAcagcgaCCCCuugGCCUGACCGgCg -3'
miRNA:   3'- cGCGGCCU------GGGGcuaUGGGUUGGUgG- -5'
23476 3' -58.3 NC_005259.1 + 37183 0.68 0.513633
Target:  5'- cGCGCgaGGACgagCUGcgGCCCuuGCCGCCa -3'
miRNA:   3'- -CGCGg-CCUGg--GGCuaUGGGu-UGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 19361 0.68 0.512636
Target:  5'- aCGCCGGgaucaagGCCCCGcUGaucaCCGGCC-CCa -3'
miRNA:   3'- cGCGGCC-------UGGGGCuAUg---GGUUGGuGG- -5'
23476 3' -58.3 NC_005259.1 + 45217 0.68 0.503695
Target:  5'- cGCGuuG-AgCCCGAUGCCCug-CACCu -3'
miRNA:   3'- -CGCggCcUgGGGCUAUGGGuugGUGG- -5'
23476 3' -58.3 NC_005259.1 + 20699 0.69 0.496787
Target:  5'- cGCGCuCGGuggucgaagguuucACCCCGccgcgcgaaaugacGUAuugguccggccauCCCGACCACCg -3'
miRNA:   3'- -CGCG-GCC--------------UGGGGC--------------UAU-------------GGGUUGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 13563 0.69 0.49384
Target:  5'- cCGCCGaccccGCCCCGAcACCCGaggACgACCc -3'
miRNA:   3'- cGCGGCc----UGGGGCUaUGGGU---UGgUGG- -5'
23476 3' -58.3 NC_005259.1 + 23674 0.69 0.49384
Target:  5'- cCGCC-GACCCCGAgcagGCgCAcgcagACUACCg -3'
miRNA:   3'- cGCGGcCUGGGGCUa---UGgGU-----UGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 7671 0.69 0.49384
Target:  5'- aGCGCCccGCCUCGuggggugGCCCGuacgucugcACCACCa -3'
miRNA:   3'- -CGCGGccUGGGGCua-----UGGGU---------UGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 6225 0.69 0.49188
Target:  5'- cGCGCCGacaccguGACCgugggcgagugggUCGAUAuCCCGcACCGCCg -3'
miRNA:   3'- -CGCGGC-------CUGG-------------GGCUAU-GGGU-UGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 46340 0.69 0.48797
Target:  5'- cGCGCaccgcuuguagguucUGGGCCgCGAUggcaccGCCCGGCC-CCa -3'
miRNA:   3'- -CGCG---------------GCCUGGgGCUA------UGGGUUGGuGG- -5'
23476 3' -58.3 NC_005259.1 + 30067 0.69 0.484075
Target:  5'- cUGCCGGACaacccacaCCCGAUG-UCGACCGCCc -3'
miRNA:   3'- cGCGGCCUG--------GGGCUAUgGGUUGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 35488 0.69 0.484075
Target:  5'- -gGCCGaacGAUCCUGGguugGCCCcguuGCCGCCg -3'
miRNA:   3'- cgCGGC---CUGGGGCUa---UGGGu---UGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 17770 0.69 0.483103
Target:  5'- cGCGCCGGGCCgagcgcaCCGAgcgUGCgC-ACCGCg -3'
miRNA:   3'- -CGCGGCCUGG-------GGCU---AUGgGuUGGUGg -5'
23476 3' -58.3 NC_005259.1 + 10063 0.69 0.481163
Target:  5'- aCGCCGGuuuGCCCucgcaggacgccgaCGAguagACCCcgaGGCCACCg -3'
miRNA:   3'- cGCGGCC---UGGG--------------GCUa---UGGG---UUGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 743 0.69 0.474402
Target:  5'- gGUGCCuacGCCgCCGGUGCCUAccgcguCCACCg -3'
miRNA:   3'- -CGCGGcc-UGG-GGCUAUGGGUu-----GGUGG- -5'
23476 3' -58.3 NC_005259.1 + 5415 0.69 0.474402
Target:  5'- cGCGCUGGccGCCacguCGAggucugcGCCCGcuGCCGCCg -3'
miRNA:   3'- -CGCGGCC--UGGg---GCUa------UGGGU--UGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.