miRNA display CGI


Results 61 - 80 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23476 3' -58.3 NC_005259.1 + 24792 0.69 0.474402
Target:  5'- uGCGCagcaGGGCCaagaCCGAggugcCCCGGCaCGCCg -3'
miRNA:   3'- -CGCGg---CCUGG----GGCUau---GGGUUG-GUGG- -5'
23476 3' -58.3 NC_005259.1 + 25095 0.68 0.555153
Target:  5'- uGCGCCc-GCCCCGAgcaagggcaaggucgACCCcGCCgACCu -3'
miRNA:   3'- -CGCGGccUGGGGCUa--------------UGGGuUGG-UGG- -5'
23476 3' -58.3 NC_005259.1 + 25928 0.78 0.14355
Target:  5'- cCGCCGGuCCggugagcgcacgCCGGUGCCCGGCCcGCCg -3'
miRNA:   3'- cGCGGCCuGG------------GGCUAUGGGUUGG-UGG- -5'
23476 3' -58.3 NC_005259.1 + 26094 0.71 0.350659
Target:  5'- cCGCCGaGAagacCCCCGAgcagACCgCcGCCGCCg -3'
miRNA:   3'- cGCGGC-CU----GGGGCUa---UGG-GuUGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 26406 0.66 0.637342
Target:  5'- aCGCCGGGCgCggCGGUGCCgccguagaaCGcACCGCCg -3'
miRNA:   3'- cGCGGCCUGgG--GCUAUGG---------GU-UGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 26615 0.74 0.239536
Target:  5'- cGCGCCGGACCgguagCCGAUAU-CGAUgGCCu -3'
miRNA:   3'- -CGCGGCCUGG-----GGCUAUGgGUUGgUGG- -5'
23476 3' -58.3 NC_005259.1 + 26778 0.75 0.216792
Target:  5'- cCGCCGGugCCuCGGaACaCCAgcGCCGCCg -3'
miRNA:   3'- cGCGGCCugGG-GCUaUG-GGU--UGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 27262 0.66 0.64781
Target:  5'- cGCGuaGGACCgauaCGccGCCUugAGCCGCCg -3'
miRNA:   3'- -CGCggCCUGGg---GCuaUGGG--UUGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 27324 0.73 0.264239
Target:  5'- uGCGCgGGuuGCCUCGGUagagcAUCCAAUCGCCg -3'
miRNA:   3'- -CGCGgCC--UGGGGCUA-----UGGGUUGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 28630 0.69 0.445988
Target:  5'- -gGCCaaGGCCaCCGGUGCCgAcACCGCCg -3'
miRNA:   3'- cgCGGc-CUGG-GGCUAUGGgU-UGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 28770 0.73 0.284094
Target:  5'- uCGCCGGugCCgacgaGGUACCCGccggucgcuacGCCAUCg -3'
miRNA:   3'- cGCGGCCugGGg----CUAUGGGU-----------UGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 28975 0.7 0.400836
Target:  5'- gGUGCCGaGGCCgCGAgcGCCCGcuACgGCCa -3'
miRNA:   3'- -CGCGGC-CUGGgGCUa-UGGGU--UGgUGG- -5'
23476 3' -58.3 NC_005259.1 + 29678 0.72 0.335728
Target:  5'- uUGCCGGACgcgccgcaaucgagaCCGAUGCCgAGgCACCg -3'
miRNA:   3'- cGCGGCCUGg--------------GGCUAUGGgUUgGUGG- -5'
23476 3' -58.3 NC_005259.1 + 30067 0.69 0.484075
Target:  5'- cUGCCGGACaacccacaCCCGAUG-UCGACCGCCc -3'
miRNA:   3'- cGCGGCCUG--------GGGCUAUgGGUUGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 30125 0.67 0.599683
Target:  5'- uUGCCGuccGGCUgCGAUACCUcgggcagcucgaccgGGCCGCCu -3'
miRNA:   3'- cGCGGC---CUGGgGCUAUGGG---------------UUGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 30386 0.67 0.585106
Target:  5'- gGCGagaaaCCGGGCCUCuaccGUAgCCAGCCGCa -3'
miRNA:   3'- -CGC-----GGCCUGGGGc---UAUgGGUUGGUGg -5'
23476 3' -58.3 NC_005259.1 + 30802 0.66 0.637342
Target:  5'- cCGCCGGAacaCCUGAgucggguagUCCGGCgCGCCg -3'
miRNA:   3'- cGCGGCCUg--GGGCUau-------GGGUUG-GUGG- -5'
23476 3' -58.3 NC_005259.1 + 31511 0.7 0.427582
Target:  5'- cGCGCCGGACUUgcuugaucggggUGGUGCCgugauaGAUCGCCu -3'
miRNA:   3'- -CGCGGCCUGGG------------GCUAUGGg-----UUGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 31752 0.67 0.574735
Target:  5'- aGCGCUGGuguCCCCaccGCCCcgUCAUCg -3'
miRNA:   3'- -CGCGGCCu--GGGGcuaUGGGuuGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 33051 0.67 0.5737
Target:  5'- uUGCCGGGgucgcucgcgugcUUCUGGUAUCCGcugGCCACCu -3'
miRNA:   3'- cGCGGCCU-------------GGGGCUAUGGGU---UGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.