Results 81 - 100 of 160 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23476 | 3' | -58.3 | NC_005259.1 | + | 33586 | 0.72 | 0.326539 |
Target: 5'- cGCGUcgCGGGCCaCCGAggcgcggucgagcUGCaaCCGGCCACCg -3' miRNA: 3'- -CGCG--GCCUGG-GGCU-------------AUG--GGUUGGUGG- -5' |
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23476 | 3' | -58.3 | NC_005259.1 | + | 33646 | 0.68 | 0.523652 |
Target: 5'- cGCGCuCGGGaaaucagCCGAgggUGCCCGGCCcACCc -3' miRNA: 3'- -CGCG-GCCUgg-----GGCU---AUGGGUUGG-UGG- -5' |
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23476 | 3' | -58.3 | NC_005259.1 | + | 34340 | 0.7 | 0.427582 |
Target: 5'- aGCGuuGGGgUUCGAcgugACCC-ACCGCCg -3' miRNA: 3'- -CGCggCCUgGGGCUa---UGGGuUGGUGG- -5' |
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23476 | 3' | -58.3 | NC_005259.1 | + | 34876 | 0.73 | 0.297975 |
Target: 5'- gGUGCCGGACCggGGUGCCUcgggcaggacgGGCCGCUc -3' miRNA: 3'- -CGCGGCCUGGggCUAUGGG-----------UUGGUGG- -5' |
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23476 | 3' | -58.3 | NC_005259.1 | + | 35276 | 0.67 | 0.564406 |
Target: 5'- cGCGCCGGGguCgCCGAUguGCCCcuugaaguaGAUgACCg -3' miRNA: 3'- -CGCGGCCU--GgGGCUA--UGGG---------UUGgUGG- -5' |
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23476 | 3' | -58.3 | NC_005259.1 | + | 35488 | 0.69 | 0.484075 |
Target: 5'- -gGCCGaacGAUCCUGGguugGCCCcguuGCCGCCg -3' miRNA: 3'- cgCGGC---CUGGGGCUa---UGGGu---UGGUGG- -5' |
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23476 | 3' | -58.3 | NC_005259.1 | + | 35523 | 0.69 | 0.451596 |
Target: 5'- cCGCCGGGCaCaccgcccgccgucgCCGAUccGCCCGaugacuuGCCGCCg -3' miRNA: 3'- cGCGGCCUG-G--------------GGCUA--UGGGU-------UGGUGG- -5' |
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23476 | 3' | -58.3 | NC_005259.1 | + | 35727 | 0.69 | 0.455356 |
Target: 5'- cCGCCcGACgaCCCGGcgcUGCCCGGCC-CCa -3' miRNA: 3'- cGCGGcCUG--GGGCU---AUGGGUUGGuGG- -5' |
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23476 | 3' | -58.3 | NC_005259.1 | + | 35816 | 0.76 | 0.176828 |
Target: 5'- gGUGCCGuacGACCCCGcAUAgCCG-CCACCg -3' miRNA: 3'- -CGCGGC---CUGGGGC-UAUgGGUuGGUGG- -5' |
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23476 | 3' | -58.3 | NC_005259.1 | + | 36138 | 0.66 | 0.668697 |
Target: 5'- cCGCCGGGCUguCCGucGCCaUGGCCACg -3' miRNA: 3'- cGCGGCCUGG--GGCuaUGG-GUUGGUGg -5' |
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23476 | 3' | -58.3 | NC_005259.1 | + | 36630 | 0.74 | 0.257246 |
Target: 5'- cGCGCCGcccgcaaGGCCCgCGAUcagcgagccgccGCCCucGCCGCCg -3' miRNA: 3'- -CGCGGC-------CUGGG-GCUA------------UGGGu-UGGUGG- -5' |
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23476 | 3' | -58.3 | NC_005259.1 | + | 36956 | 0.66 | 0.637342 |
Target: 5'- gGUGCCcgcgaGACCgCCucgGCCCGcACCGCCg -3' miRNA: 3'- -CGCGGc----CUGG-GGcuaUGGGU-UGGUGG- -5' |
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23476 | 3' | -58.3 | NC_005259.1 | + | 37012 | 0.68 | 0.517632 |
Target: 5'- cGCGCCcgccggGGAacaugacaaugucgaUCuuGGUGCCCG-CCACCg -3' miRNA: 3'- -CGCGG------CCU---------------GGggCUAUGGGUuGGUGG- -5' |
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23476 | 3' | -58.3 | NC_005259.1 | + | 37183 | 0.68 | 0.513633 |
Target: 5'- cGCGCgaGGACgagCUGcgGCCCuuGCCGCCa -3' miRNA: 3'- -CGCGg-CCUGg--GGCuaUGGGu-UGGUGG- -5' |
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23476 | 3' | -58.3 | NC_005259.1 | + | 37241 | 0.68 | 0.522647 |
Target: 5'- cGUGCCGGauuggcuGCCgCCGuUGCCaggcuugaGGCCGCCc -3' miRNA: 3'- -CGCGGCC-------UGG-GGCuAUGGg-------UUGGUGG- -5' |
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23476 | 3' | -58.3 | NC_005259.1 | + | 37656 | 0.66 | 0.668697 |
Target: 5'- cCGCCGccGCCgCCGGUGCC--GCCACg -3' miRNA: 3'- cGCGGCc-UGG-GGCUAUGGguUGGUGg -5' |
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23476 | 3' | -58.3 | NC_005259.1 | + | 37697 | 0.77 | 0.159407 |
Target: 5'- cGCGCCGGacugauuuuGCCCUGccagACCCGaggcACCGCCg -3' miRNA: 3'- -CGCGGCC---------UGGGGCua--UGGGU----UGGUGG- -5' |
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23476 | 3' | -58.3 | NC_005259.1 | + | 38022 | 0.74 | 0.239536 |
Target: 5'- uUGUCaGGCCCgCGuugguGUACCCGGCCACCa -3' miRNA: 3'- cGCGGcCUGGG-GC-----UAUGGGUUGGUGG- -5' |
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23476 | 3' | -58.3 | NC_005259.1 | + | 38934 | 0.71 | 0.358705 |
Target: 5'- gGUGuuGcuGugCCCGGUGCCgCuGCCGCCg -3' miRNA: 3'- -CGCggC--CugGGGCUAUGG-GuUGGUGG- -5' |
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23476 | 3' | -58.3 | NC_005259.1 | + | 39359 | 0.67 | 0.562346 |
Target: 5'- cGUGCCGGGCCUCGucgggaacguCCCAGuucgUCACg -3' miRNA: 3'- -CGCGGCCUGGGGCuau-------GGGUU----GGUGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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