Results 101 - 120 of 160 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23476 | 3' | -58.3 | NC_005259.1 | + | 40679 | 0.67 | 0.589265 |
Target: 5'- aGCGCCuuGGugCUCaccgGCCCGaugaucggggugcccGCCACCa -3' miRNA: 3'- -CGCGG--CCugGGGcua-UGGGU---------------UGGUGG- -5' |
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23476 | 3' | -58.3 | NC_005259.1 | + | 40827 | 0.66 | 0.675982 |
Target: 5'- cGCGCacgauGGGCCgcgugUUGAUGCCCugcgccucgaccauGGCCGCCc -3' miRNA: 3'- -CGCGg----CCUGG-----GGCUAUGGG--------------UUGGUGG- -5' |
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23476 | 3' | -58.3 | NC_005259.1 | + | 41405 | 0.68 | 0.533744 |
Target: 5'- cGCGCCGcucgggguGCCCaCGAUguGCaCgGGCCGCCa -3' miRNA: 3'- -CGCGGCc-------UGGG-GCUA--UG-GgUUGGUGG- -5' |
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23476 | 3' | -58.3 | NC_005259.1 | + | 42223 | 0.77 | 0.159407 |
Target: 5'- cGCGCCGccguCCCCGGccauCUCGACCACCu -3' miRNA: 3'- -CGCGGCcu--GGGGCUau--GGGUUGGUGG- -5' |
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23476 | 3' | -58.3 | NC_005259.1 | + | 43260 | 0.74 | 0.241917 |
Target: 5'- cGCGCCgGGugCCUGAgaguugaccgcagcGCCCG-CCGCCg -3' miRNA: 3'- -CGCGG-CCugGGGCUa-------------UGGGUuGGUGG- -5' |
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23476 | 3' | -58.3 | NC_005259.1 | + | 44171 | 0.7 | 0.409633 |
Target: 5'- cGCGCCGGugUCgGAgaaaAgUCGACCGCUc -3' miRNA: 3'- -CGCGGCCugGGgCUa---UgGGUUGGUGG- -5' |
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23476 | 3' | -58.3 | NC_005259.1 | + | 44429 | 0.7 | 0.4061 |
Target: 5'- aGCGCCGauaccGGCCCCGAagauguucuugagACCgGggauGCCGCCg -3' miRNA: 3'- -CGCGGC-----CUGGGGCUa------------UGGgU----UGGUGG- -5' |
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23476 | 3' | -58.3 | NC_005259.1 | + | 44482 | 0.73 | 0.280031 |
Target: 5'- -gGCCGGGCCaguuggugacguagaCCGGggUGCCCuGGCCACCc -3' miRNA: 3'- cgCGGCCUGG---------------GGCU--AUGGG-UUGGUGG- -5' |
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23476 | 3' | -58.3 | NC_005259.1 | + | 44981 | 0.69 | 0.445988 |
Target: 5'- aGgGCCGGugCgacugCCGAgGCaccgCCGACCGCCg -3' miRNA: 3'- -CgCGGCCugG-----GGCUaUG----GGUUGGUGG- -5' |
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23476 | 3' | -58.3 | NC_005259.1 | + | 45217 | 0.68 | 0.503695 |
Target: 5'- cGCGuuG-AgCCCGAUGCCCug-CACCu -3' miRNA: 3'- -CGCggCcUgGGGCUAUGGGuugGUGG- -5' |
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23476 | 3' | -58.3 | NC_005259.1 | + | 45304 | 0.74 | 0.245525 |
Target: 5'- cGCGCCGGugACgCCGAgGCC--GCCGCCg -3' miRNA: 3'- -CGCGGCC--UGgGGCUaUGGguUGGUGG- -5' |
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23476 | 3' | -58.3 | NC_005259.1 | + | 45520 | 0.67 | 0.596555 |
Target: 5'- cGCGCCGGuguugGCCgCCGuggcugcgagcggguUGCUCGccggGCCACCc -3' miRNA: 3'- -CGCGGCC-----UGG-GGCu--------------AUGGGU----UGGUGG- -5' |
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23476 | 3' | -58.3 | NC_005259.1 | + | 45627 | 0.72 | 0.312375 |
Target: 5'- cCGCCGGGCCgggcagcgcgCCGGUGCCgCcgugaacACCGCCg -3' miRNA: 3'- cGCGGCCUGG----------GGCUAUGG-Gu------UGGUGG- -5' |
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23476 | 3' | -58.3 | NC_005259.1 | + | 46082 | 0.71 | 0.358705 |
Target: 5'- cCGCCGGGgCgagCGGUGCCuCAACCACg -3' miRNA: 3'- cGCGGCCUgGg--GCUAUGG-GUUGGUGg -5' |
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23476 | 3' | -58.3 | NC_005259.1 | + | 46340 | 0.69 | 0.48797 |
Target: 5'- cGCGCaccgcuuguagguucUGGGCCgCGAUggcaccGCCCGGCC-CCa -3' miRNA: 3'- -CGCG---------------GCCUGGgGCUA------UGGGUUGGuGG- -5' |
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23476 | 3' | -58.3 | NC_005259.1 | + | 46787 | 0.72 | 0.334955 |
Target: 5'- cCGCCGGGCCgaacaCCGAgccUGCgagcgcaccaCCGGCCACCu -3' miRNA: 3'- cGCGGCCUGG-----GGCU---AUG----------GGUUGGUGG- -5' |
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23476 | 3' | -58.3 | NC_005259.1 | + | 46884 | 0.67 | 0.585106 |
Target: 5'- cGCGCCGccGCCCgCGAUGagCGcCCGCCg -3' miRNA: 3'- -CGCGGCc-UGGG-GCUAUggGUuGGUGG- -5' |
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23476 | 3' | -58.3 | NC_005259.1 | + | 46925 | 0.66 | 0.64781 |
Target: 5'- uGCGCCG----CCGAgcuUGCCCGccgcGCCGCCg -3' miRNA: 3'- -CGCGGCcuggGGCU---AUGGGU----UGGUGG- -5' |
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23476 | 3' | -58.3 | NC_005259.1 | + | 47298 | 0.68 | 0.513633 |
Target: 5'- uCGCCGGAcagcgaCCCCuugGCCUGACCGgCg -3' miRNA: 3'- cGCGGCCU------GGGGcuaUGGGUUGGUgG- -5' |
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23476 | 3' | -58.3 | NC_005259.1 | + | 47927 | 0.66 | 0.672862 |
Target: 5'- uCGCCGaGGCCCUGgAagccgaugacggcggUGCCgAugGCCGCCg -3' miRNA: 3'- cGCGGC-CUGGGGC-U---------------AUGGgU--UGGUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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