miRNA display CGI


Results 41 - 60 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23476 3' -58.3 NC_005259.1 + 47927 0.66 0.672862
Target:  5'- uCGCCGaGGCCCUGgAagccgaugacggcggUGCCgAugGCCGCCg -3'
miRNA:   3'- cGCGGC-CUGGGGC-U---------------AUGGgU--UGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 47298 0.68 0.513633
Target:  5'- uCGCCGGAcagcgaCCCCuugGCCUGACCGgCg -3'
miRNA:   3'- cGCGGCCU------GGGGcuaUGGGUUGGUgG- -5'
23476 3' -58.3 NC_005259.1 + 46925 0.66 0.64781
Target:  5'- uGCGCCG----CCGAgcuUGCCCGccgcGCCGCCg -3'
miRNA:   3'- -CGCGGCcuggGGCU---AUGGGU----UGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 46884 0.67 0.585106
Target:  5'- cGCGCCGccGCCCgCGAUGagCGcCCGCCg -3'
miRNA:   3'- -CGCGGCc-UGGG-GCUAUggGUuGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 46787 0.72 0.334955
Target:  5'- cCGCCGGGCCgaacaCCGAgccUGCgagcgcaccaCCGGCCACCu -3'
miRNA:   3'- cGCGGCCUGG-----GGCU---AUG----------GGUUGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 46340 0.69 0.48797
Target:  5'- cGCGCaccgcuuguagguucUGGGCCgCGAUggcaccGCCCGGCC-CCa -3'
miRNA:   3'- -CGCG---------------GCCUGGgGCUA------UGGGUUGGuGG- -5'
23476 3' -58.3 NC_005259.1 + 46082 0.71 0.358705
Target:  5'- cCGCCGGGgCgagCGGUGCCuCAACCACg -3'
miRNA:   3'- cGCGGCCUgGg--GCUAUGG-GUUGGUGg -5'
23476 3' -58.3 NC_005259.1 + 45627 0.72 0.312375
Target:  5'- cCGCCGGGCCgggcagcgcgCCGGUGCCgCcgugaacACCGCCg -3'
miRNA:   3'- cGCGGCCUGG----------GGCUAUGG-Gu------UGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 45520 0.67 0.596555
Target:  5'- cGCGCCGGuguugGCCgCCGuggcugcgagcggguUGCUCGccggGCCACCc -3'
miRNA:   3'- -CGCGGCC-----UGG-GGCu--------------AUGGGU----UGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 45304 0.74 0.245525
Target:  5'- cGCGCCGGugACgCCGAgGCC--GCCGCCg -3'
miRNA:   3'- -CGCGGCC--UGgGGCUaUGGguUGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 45217 0.68 0.503695
Target:  5'- cGCGuuG-AgCCCGAUGCCCug-CACCu -3'
miRNA:   3'- -CGCggCcUgGGGCUAUGGGuugGUGG- -5'
23476 3' -58.3 NC_005259.1 + 44981 0.69 0.445988
Target:  5'- aGgGCCGGugCgacugCCGAgGCaccgCCGACCGCCg -3'
miRNA:   3'- -CgCGGCCugG-----GGCUaUG----GGUUGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 44482 0.73 0.280031
Target:  5'- -gGCCGGGCCaguuggugacguagaCCGGggUGCCCuGGCCACCc -3'
miRNA:   3'- cgCGGCCUGG---------------GGCU--AUGGG-UUGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 44429 0.7 0.4061
Target:  5'- aGCGCCGauaccGGCCCCGAagauguucuugagACCgGggauGCCGCCg -3'
miRNA:   3'- -CGCGGC-----CUGGGGCUa------------UGGgU----UGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 44171 0.7 0.409633
Target:  5'- cGCGCCGGugUCgGAgaaaAgUCGACCGCUc -3'
miRNA:   3'- -CGCGGCCugGGgCUa---UgGGUUGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 43260 0.74 0.241917
Target:  5'- cGCGCCgGGugCCUGAgaguugaccgcagcGCCCG-CCGCCg -3'
miRNA:   3'- -CGCGG-CCugGGGCUa-------------UGGGUuGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 42223 0.77 0.159407
Target:  5'- cGCGCCGccguCCCCGGccauCUCGACCACCu -3'
miRNA:   3'- -CGCGGCcu--GGGGCUau--GGGUUGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 41405 0.68 0.533744
Target:  5'- cGCGCCGcucgggguGCCCaCGAUguGCaCgGGCCGCCa -3'
miRNA:   3'- -CGCGGCc-------UGGG-GCUA--UG-GgUUGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 40827 0.66 0.675982
Target:  5'- cGCGCacgauGGGCCgcgugUUGAUGCCCugcgccucgaccauGGCCGCCc -3'
miRNA:   3'- -CGCGg----CCUGG-----GGCUAUGGG--------------UUGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 40679 0.67 0.589265
Target:  5'- aGCGCCuuGGugCUCaccgGCCCGaugaucggggugcccGCCACCa -3'
miRNA:   3'- -CGCGG--CCugGGGcua-UGGGU---------------UGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.