miRNA display CGI


Results 61 - 80 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23476 3' -58.3 NC_005259.1 + 39359 0.67 0.562346
Target:  5'- cGUGCCGGGCCUCGucgggaacguCCCAGuucgUCACg -3'
miRNA:   3'- -CGCGGCCUGGGGCuau-------GGGUU----GGUGg -5'
23476 3' -58.3 NC_005259.1 + 38934 0.71 0.358705
Target:  5'- gGUGuuGcuGugCCCGGUGCCgCuGCCGCCg -3'
miRNA:   3'- -CGCggC--CugGGGCUAUGG-GuUGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 38022 0.74 0.239536
Target:  5'- uUGUCaGGCCCgCGuugguGUACCCGGCCACCa -3'
miRNA:   3'- cGCGGcCUGGG-GC-----UAUGGGUUGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 37697 0.77 0.159407
Target:  5'- cGCGCCGGacugauuuuGCCCUGccagACCCGaggcACCGCCg -3'
miRNA:   3'- -CGCGGCC---------UGGGGCua--UGGGU----UGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 37656 0.66 0.668697
Target:  5'- cCGCCGccGCCgCCGGUGCC--GCCACg -3'
miRNA:   3'- cGCGGCc-UGG-GGCUAUGGguUGGUGg -5'
23476 3' -58.3 NC_005259.1 + 37241 0.68 0.522647
Target:  5'- cGUGCCGGauuggcuGCCgCCGuUGCCaggcuugaGGCCGCCc -3'
miRNA:   3'- -CGCGGCC-------UGG-GGCuAUGGg-------UUGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 37183 0.68 0.513633
Target:  5'- cGCGCgaGGACgagCUGcgGCCCuuGCCGCCa -3'
miRNA:   3'- -CGCGg-CCUGg--GGCuaUGGGu-UGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 37012 0.68 0.517632
Target:  5'- cGCGCCcgccggGGAacaugacaaugucgaUCuuGGUGCCCG-CCACCg -3'
miRNA:   3'- -CGCGG------CCU---------------GGggCUAUGGGUuGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 36956 0.66 0.637342
Target:  5'- gGUGCCcgcgaGACCgCCucgGCCCGcACCGCCg -3'
miRNA:   3'- -CGCGGc----CUGG-GGcuaUGGGU-UGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 36630 0.74 0.257246
Target:  5'- cGCGCCGcccgcaaGGCCCgCGAUcagcgagccgccGCCCucGCCGCCg -3'
miRNA:   3'- -CGCGGC-------CUGGG-GCUA------------UGGGu-UGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 36138 0.66 0.668697
Target:  5'- cCGCCGGGCUguCCGucGCCaUGGCCACg -3'
miRNA:   3'- cGCGGCCUGG--GGCuaUGG-GUUGGUGg -5'
23476 3' -58.3 NC_005259.1 + 35816 0.76 0.176828
Target:  5'- gGUGCCGuacGACCCCGcAUAgCCG-CCACCg -3'
miRNA:   3'- -CGCGGC---CUGGGGC-UAUgGGUuGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 35727 0.69 0.455356
Target:  5'- cCGCCcGACgaCCCGGcgcUGCCCGGCC-CCa -3'
miRNA:   3'- cGCGGcCUG--GGGCU---AUGGGUUGGuGG- -5'
23476 3' -58.3 NC_005259.1 + 35523 0.69 0.451596
Target:  5'- cCGCCGGGCaCaccgcccgccgucgCCGAUccGCCCGaugacuuGCCGCCg -3'
miRNA:   3'- cGCGGCCUG-G--------------GGCUA--UGGGU-------UGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 35488 0.69 0.484075
Target:  5'- -gGCCGaacGAUCCUGGguugGCCCcguuGCCGCCg -3'
miRNA:   3'- cgCGGC---CUGGGGCUa---UGGGu---UGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 35276 0.67 0.564406
Target:  5'- cGCGCCGGGguCgCCGAUguGCCCcuugaaguaGAUgACCg -3'
miRNA:   3'- -CGCGGCCU--GgGGCUA--UGGG---------UUGgUGG- -5'
23476 3' -58.3 NC_005259.1 + 34876 0.73 0.297975
Target:  5'- gGUGCCGGACCggGGUGCCUcgggcaggacgGGCCGCUc -3'
miRNA:   3'- -CGCGGCCUGGggCUAUGGG-----------UUGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 34340 0.7 0.427582
Target:  5'- aGCGuuGGGgUUCGAcgugACCC-ACCGCCg -3'
miRNA:   3'- -CGCggCCUgGGGCUa---UGGGuUGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 33646 0.68 0.523652
Target:  5'- cGCGCuCGGGaaaucagCCGAgggUGCCCGGCCcACCc -3'
miRNA:   3'- -CGCG-GCCUgg-----GGCU---AUGGGUUGG-UGG- -5'
23476 3' -58.3 NC_005259.1 + 33586 0.72 0.326539
Target:  5'- cGCGUcgCGGGCCaCCGAggcgcggucgagcUGCaaCCGGCCACCg -3'
miRNA:   3'- -CGCG--GCCUGG-GGCU-------------AUG--GGUUGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.