Results 81 - 100 of 160 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23476 | 3' | -58.3 | NC_005259.1 | + | 33051 | 0.67 | 0.5737 |
Target: 5'- uUGCCGGGgucgcucgcgugcUUCUGGUAUCCGcugGCCACCu -3' miRNA: 3'- cGCGGCCU-------------GGGGCUAUGGGU---UGGUGG- -5' |
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23476 | 3' | -58.3 | NC_005259.1 | + | 31752 | 0.67 | 0.574735 |
Target: 5'- aGCGCUGGuguCCCCaccGCCCcgUCAUCg -3' miRNA: 3'- -CGCGGCCu--GGGGcuaUGGGuuGGUGG- -5' |
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23476 | 3' | -58.3 | NC_005259.1 | + | 31511 | 0.7 | 0.427582 |
Target: 5'- cGCGCCGGACUUgcuugaucggggUGGUGCCgugauaGAUCGCCu -3' miRNA: 3'- -CGCGGCCUGGG------------GCUAUGGg-----UUGGUGG- -5' |
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23476 | 3' | -58.3 | NC_005259.1 | + | 30802 | 0.66 | 0.637342 |
Target: 5'- cCGCCGGAacaCCUGAgucggguagUCCGGCgCGCCg -3' miRNA: 3'- cGCGGCCUg--GGGCUau-------GGGUUG-GUGG- -5' |
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23476 | 3' | -58.3 | NC_005259.1 | + | 30386 | 0.67 | 0.585106 |
Target: 5'- gGCGagaaaCCGGGCCUCuaccGUAgCCAGCCGCa -3' miRNA: 3'- -CGC-----GGCCUGGGGc---UAUgGGUUGGUGg -5' |
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23476 | 3' | -58.3 | NC_005259.1 | + | 30125 | 0.67 | 0.599683 |
Target: 5'- uUGCCGuccGGCUgCGAUACCUcgggcagcucgaccgGGCCGCCu -3' miRNA: 3'- cGCGGC---CUGGgGCUAUGGG---------------UUGGUGG- -5' |
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23476 | 3' | -58.3 | NC_005259.1 | + | 30067 | 0.69 | 0.484075 |
Target: 5'- cUGCCGGACaacccacaCCCGAUG-UCGACCGCCc -3' miRNA: 3'- cGCGGCCUG--------GGGCUAUgGGUUGGUGG- -5' |
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23476 | 3' | -58.3 | NC_005259.1 | + | 29678 | 0.72 | 0.335728 |
Target: 5'- uUGCCGGACgcgccgcaaucgagaCCGAUGCCgAGgCACCg -3' miRNA: 3'- cGCGGCCUGg--------------GGCUAUGGgUUgGUGG- -5' |
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23476 | 3' | -58.3 | NC_005259.1 | + | 28975 | 0.7 | 0.400836 |
Target: 5'- gGUGCCGaGGCCgCGAgcGCCCGcuACgGCCa -3' miRNA: 3'- -CGCGGC-CUGGgGCUa-UGGGU--UGgUGG- -5' |
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23476 | 3' | -58.3 | NC_005259.1 | + | 28770 | 0.73 | 0.284094 |
Target: 5'- uCGCCGGugCCgacgaGGUACCCGccggucgcuacGCCAUCg -3' miRNA: 3'- cGCGGCCugGGg----CUAUGGGU-----------UGGUGG- -5' |
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23476 | 3' | -58.3 | NC_005259.1 | + | 28630 | 0.69 | 0.445988 |
Target: 5'- -gGCCaaGGCCaCCGGUGCCgAcACCGCCg -3' miRNA: 3'- cgCGGc-CUGG-GGCUAUGGgU-UGGUGG- -5' |
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23476 | 3' | -58.3 | NC_005259.1 | + | 27324 | 0.73 | 0.264239 |
Target: 5'- uGCGCgGGuuGCCUCGGUagagcAUCCAAUCGCCg -3' miRNA: 3'- -CGCGgCC--UGGGGCUA-----UGGGUUGGUGG- -5' |
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23476 | 3' | -58.3 | NC_005259.1 | + | 27262 | 0.66 | 0.64781 |
Target: 5'- cGCGuaGGACCgauaCGccGCCUugAGCCGCCg -3' miRNA: 3'- -CGCggCCUGGg---GCuaUGGG--UUGGUGG- -5' |
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23476 | 3' | -58.3 | NC_005259.1 | + | 26778 | 0.75 | 0.216792 |
Target: 5'- cCGCCGGugCCuCGGaACaCCAgcGCCGCCg -3' miRNA: 3'- cGCGGCCugGG-GCUaUG-GGU--UGGUGG- -5' |
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23476 | 3' | -58.3 | NC_005259.1 | + | 26615 | 0.74 | 0.239536 |
Target: 5'- cGCGCCGGACCgguagCCGAUAU-CGAUgGCCu -3' miRNA: 3'- -CGCGGCCUGG-----GGCUAUGgGUUGgUGG- -5' |
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23476 | 3' | -58.3 | NC_005259.1 | + | 26406 | 0.66 | 0.637342 |
Target: 5'- aCGCCGGGCgCggCGGUGCCgccguagaaCGcACCGCCg -3' miRNA: 3'- cGCGGCCUGgG--GCUAUGG---------GU-UGGUGG- -5' |
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23476 | 3' | -58.3 | NC_005259.1 | + | 26094 | 0.71 | 0.350659 |
Target: 5'- cCGCCGaGAagacCCCCGAgcagACCgCcGCCGCCg -3' miRNA: 3'- cGCGGC-CU----GGGGCUa---UGG-GuUGGUGG- -5' |
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23476 | 3' | -58.3 | NC_005259.1 | + | 25928 | 0.78 | 0.14355 |
Target: 5'- cCGCCGGuCCggugagcgcacgCCGGUGCCCGGCCcGCCg -3' miRNA: 3'- cGCGGCCuGG------------GGCUAUGGGUUGG-UGG- -5' |
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23476 | 3' | -58.3 | NC_005259.1 | + | 25095 | 0.68 | 0.555153 |
Target: 5'- uGCGCCc-GCCCCGAgcaagggcaaggucgACCCcGCCgACCu -3' miRNA: 3'- -CGCGGccUGGGGCUa--------------UGGGuUGG-UGG- -5' |
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23476 | 3' | -58.3 | NC_005259.1 | + | 24792 | 0.69 | 0.474402 |
Target: 5'- uGCGCagcaGGGCCaagaCCGAggugcCCCGGCaCGCCg -3' miRNA: 3'- -CGCGg---CCUGG----GGCUau---GGGUUG-GUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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