miRNA display CGI


Results 41 - 60 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23476 3' -58.3 NC_005259.1 + 4358 0.76 0.176828
Target:  5'- aGCGCCGGACggcacgCCCG-UGCCCugcucAUCGCCa -3'
miRNA:   3'- -CGCGGCCUG------GGGCuAUGGGu----UGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 7861 0.77 0.163612
Target:  5'- cGCGCC-GACCCCGGUgGCCCGAgUGCUu -3'
miRNA:   3'- -CGCGGcCUGGGGCUA-UGGGUUgGUGG- -5'
23476 3' -58.3 NC_005259.1 + 42223 0.77 0.159407
Target:  5'- cGCGCCGccguCCCCGGccauCUCGACCACCu -3'
miRNA:   3'- -CGCGGCcu--GGGGCUau--GGGUUGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 37697 0.77 0.159407
Target:  5'- cGCGCCGGacugauuuuGCCCUGccagACCCGaggcACCGCCg -3'
miRNA:   3'- -CGCGGCC---------UGGGGCua--UGGGU----UGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 25928 0.78 0.14355
Target:  5'- cCGCCGGuCCggugagcgcacgCCGGUGCCCGGCCcGCCg -3'
miRNA:   3'- cGCGGCCuGG------------GGCUAUGGGUUGG-UGG- -5'
23476 3' -58.3 NC_005259.1 + 26778 0.75 0.216792
Target:  5'- cCGCCGGugCCuCGGaACaCCAgcGCCGCCg -3'
miRNA:   3'- cGCGGCCugGG-GCUaUG-GGU--UGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 52297 0.74 0.233669
Target:  5'- cGCGCCuaucucuACCUCGGUACCCAcAUCACCu -3'
miRNA:   3'- -CGCGGcc-----UGGGGCUAUGGGU-UGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 34876 0.73 0.297975
Target:  5'- gGUGCCGGACCggGGUGCCUcgggcaggacgGGCCGCUc -3'
miRNA:   3'- -CGCGGCCUGGggCUAUGGG-----------UUGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 28770 0.73 0.284094
Target:  5'- uCGCCGGugCCgacgaGGUACCCGccggucgcuacGCCAUCg -3'
miRNA:   3'- cGCGGCCugGGg----CUAUGGGU-----------UGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 44482 0.73 0.280031
Target:  5'- -gGCCGGGCCaguuggugacguagaCCGGggUGCCCuGGCCACCc -3'
miRNA:   3'- cgCGGCCUGG---------------GGCU--AUGGG-UUGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 57978 0.73 0.270075
Target:  5'- uCGCCGGgaucgugACCCCGGUcgAgCCAGCgACCa -3'
miRNA:   3'- cGCGGCC-------UGGGGCUA--UgGGUUGgUGG- -5'
23476 3' -58.3 NC_005259.1 + 27324 0.73 0.264239
Target:  5'- uGCGCgGGuuGCCUCGGUagagcAUCCAAUCGCCg -3'
miRNA:   3'- -CGCGgCC--UGGGGCUA-----UGGGUUGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 36630 0.74 0.257246
Target:  5'- cGCGCCGcccgcaaGGCCCgCGAUcagcgagccgccGCCCucGCCGCCg -3'
miRNA:   3'- -CGCGGC-------CUGGG-GCUA------------UGGGu-UGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 18265 0.74 0.256618
Target:  5'- cGCGCCugaaccugagacGACCUCGAcGCCCGacgaGCCGCCg -3'
miRNA:   3'- -CGCGGc-----------CUGGGGCUaUGGGU----UGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 18573 0.74 0.251638
Target:  5'- cCGCCGccGACCCCGAgcagaCCGACC-CCg -3'
miRNA:   3'- cGCGGC--CUGGGGCUaug--GGUUGGuGG- -5'
23476 3' -58.3 NC_005259.1 + 45304 0.74 0.245525
Target:  5'- cGCGCCGGugACgCCGAgGCC--GCCGCCg -3'
miRNA:   3'- -CGCGGCC--UGgGGCUaUGGguUGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 43260 0.74 0.241917
Target:  5'- cGCGCCgGGugCCUGAgaguugaccgcagcGCCCG-CCGCCg -3'
miRNA:   3'- -CGCGG-CCugGGGCUa-------------UGGGUuGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 26615 0.74 0.239536
Target:  5'- cGCGCCGGACCgguagCCGAUAU-CGAUgGCCu -3'
miRNA:   3'- -CGCGGCCUGG-----GGCUAUGgGUUGgUGG- -5'
23476 3' -58.3 NC_005259.1 + 12938 0.74 0.239536
Target:  5'- --aCCGGACCCCGGcUGCgCGACC-CCg -3'
miRNA:   3'- cgcGGCCUGGGGCU-AUGgGUUGGuGG- -5'
23476 3' -58.3 NC_005259.1 + 38022 0.74 0.239536
Target:  5'- uUGUCaGGCCCgCGuugguGUACCCGGCCACCa -3'
miRNA:   3'- cGCGGcCUGGG-GC-----UAUGGGUUGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.