miRNA display CGI


Results 61 - 80 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23476 3' -58.3 NC_005259.1 + 43260 0.74 0.241917
Target:  5'- cGCGCCgGGugCCUGAgaguugaccgcagcGCCCG-CCGCCg -3'
miRNA:   3'- -CGCGG-CCugGGGCUa-------------UGGGUuGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 45304 0.74 0.245525
Target:  5'- cGCGCCGGugACgCCGAgGCC--GCCGCCg -3'
miRNA:   3'- -CGCGGCC--UGgGGCUaUGGguUGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 33586 0.72 0.326539
Target:  5'- cGCGUcgCGGGCCaCCGAggcgcggucgagcUGCaaCCGGCCACCg -3'
miRNA:   3'- -CGCG--GCCUGG-GGCU-------------AUG--GGUUGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 9947 0.72 0.334183
Target:  5'- uGCGCC--ACCaaucgagCCGAccGCCCGACCACCg -3'
miRNA:   3'- -CGCGGccUGG-------GGCUa-UGGGUUGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 63666 0.72 0.334955
Target:  5'- aCGCCGGACaCCuCGGgcaCCGGCgCGCCg -3'
miRNA:   3'- cGCGGCCUG-GG-GCUaugGGUUG-GUGG- -5'
23476 3' -58.3 NC_005259.1 + 46787 0.72 0.334955
Target:  5'- cCGCCGGGCCgaacaCCGAgccUGCgagcgcaccaCCGGCCACCu -3'
miRNA:   3'- cGCGGCCUGG-----GGCU---AUG----------GGUUGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 29678 0.72 0.335728
Target:  5'- uUGCCGGACgcgccgcaaucgagaCCGAUGCCgAGgCACCg -3'
miRNA:   3'- cGCGGCCUGg--------------GGCUAUGGgUUgGUGG- -5'
23476 3' -58.3 NC_005259.1 + 20143 0.72 0.342742
Target:  5'- cGCGaugaCGG-CagCCGGUGCCCuGGCCACCg -3'
miRNA:   3'- -CGCg---GCCuGg-GGCUAUGGG-UUGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 7247 0.72 0.342742
Target:  5'- cGCGCCGGugucgagugcGCCaaGAaacUGCUCGGCUACCg -3'
miRNA:   3'- -CGCGGCC----------UGGggCU---AUGGGUUGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 7626 0.72 0.342742
Target:  5'- aGgGCCGGACCuacaccgucgCCGAgu-UCGACCGCCg -3'
miRNA:   3'- -CgCGGCCUGG----------GGCUaugGGUUGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 45627 0.72 0.312375
Target:  5'- cCGCCGGGCCgggcagcgcgCCGGUGCCgCcgugaacACCGCCg -3'
miRNA:   3'- cGCGGCCUGG----------GGCUAUGG-Gu------UGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 6099 0.72 0.30511
Target:  5'- aCGCCGaGAUCgCCGAgGCCgaGGCCGCCg -3'
miRNA:   3'- cGCGGC-CUGG-GGCUaUGGg-UUGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 18573 0.74 0.251638
Target:  5'- cCGCCGccGACCCCGAgcagaCCGACC-CCg -3'
miRNA:   3'- cGCGGC--CUGGGGCUaug--GGUUGGuGG- -5'
23476 3' -58.3 NC_005259.1 + 18265 0.74 0.256618
Target:  5'- cGCGCCugaaccugagacGACCUCGAcGCCCGacgaGCCGCCg -3'
miRNA:   3'- -CGCGGc-----------CUGGGGCUaUGGGU----UGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 36630 0.74 0.257246
Target:  5'- cGCGCCGcccgcaaGGCCCgCGAUcagcgagccgccGCCCucGCCGCCg -3'
miRNA:   3'- -CGCGGC-------CUGGG-GCUA------------UGGGu-UGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 27324 0.73 0.264239
Target:  5'- uGCGCgGGuuGCCUCGGUagagcAUCCAAUCGCCg -3'
miRNA:   3'- -CGCGgCC--UGGGGCUA-----UGGGUUGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 57978 0.73 0.270075
Target:  5'- uCGCCGGgaucgugACCCCGGUcgAgCCAGCgACCa -3'
miRNA:   3'- cGCGGCC-------UGGGGCUA--UgGGUUGgUGG- -5'
23476 3' -58.3 NC_005259.1 + 44482 0.73 0.280031
Target:  5'- -gGCCGGGCCaguuggugacguagaCCGGggUGCCCuGGCCACCc -3'
miRNA:   3'- cgCGGCCUGG---------------GGCU--AUGGG-UUGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 28770 0.73 0.284094
Target:  5'- uCGCCGGugCCgacgaGGUACCCGccggucgcuacGCCAUCg -3'
miRNA:   3'- cGCGGCCugGGg----CUAUGGGU-----------UGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 34876 0.73 0.297975
Target:  5'- gGUGCCGGACCggGGUGCCUcgggcaggacgGGCCGCUc -3'
miRNA:   3'- -CGCGGCCUGGggCUAUGGG-----------UUGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.