miRNA display CGI


Results 81 - 100 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23476 3' -58.3 NC_005259.1 + 38934 0.71 0.358705
Target:  5'- gGUGuuGcuGugCCCGGUGCCgCuGCCGCCg -3'
miRNA:   3'- -CGCggC--CugGGGCUAUGG-GuUGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 23717 0.71 0.358705
Target:  5'- cGCGCCGGACggUUCGGUGCUCAcgugggacgGCgACCc -3'
miRNA:   3'- -CGCGGCCUG--GGGCUAUGGGU---------UGgUGG- -5'
23476 3' -58.3 NC_005259.1 + 46082 0.71 0.358705
Target:  5'- cCGCCGGGgCgagCGGUGCCuCAACCACg -3'
miRNA:   3'- cGCGGCCUgGg--GCUAUGG-GUUGGUGg -5'
23476 3' -58.3 NC_005259.1 + 48131 0.71 0.358705
Target:  5'- cCGCCucGACCaCCGccgcCCCGGCCACCa -3'
miRNA:   3'- cGCGGc-CUGG-GGCuau-GGGUUGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 9534 0.71 0.366879
Target:  5'- cCGCCGGGUCaCCGGagagcUGCCCGGCCucgACCg -3'
miRNA:   3'- cGCGGCCUGG-GGCU-----AUGGGUUGG---UGG- -5'
23476 3' -58.3 NC_005259.1 + 51455 0.71 0.381913
Target:  5'- cGCGCCGauagagcuuguuGCCCuCGGcgACCCAcACCGCCg -3'
miRNA:   3'- -CGCGGCc-----------UGGG-GCUa-UGGGU-UGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 9631 0.71 0.392161
Target:  5'- cGCGCCGGugCCC-----UCGAUCACCu -3'
miRNA:   3'- -CGCGGCCugGGGcuaugGGUUGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 7626 0.72 0.342742
Target:  5'- aGgGCCGGACCuacaccgucgCCGAgu-UCGACCGCCg -3'
miRNA:   3'- -CgCGGCCUGG----------GGCUaugGGUUGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 7247 0.72 0.342742
Target:  5'- cGCGCCGGugucgagugcGCCaaGAaacUGCUCGGCUACCg -3'
miRNA:   3'- -CGCGGCC----------UGGggCU---AUGGGUUGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 20143 0.72 0.342742
Target:  5'- cGCGaugaCGG-CagCCGGUGCCCuGGCCACCg -3'
miRNA:   3'- -CGCg---GCCuGg-GGCUAUGGG-UUGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 44482 0.73 0.280031
Target:  5'- -gGCCGGGCCaguuggugacguagaCCGGggUGCCCuGGCCACCc -3'
miRNA:   3'- cgCGGCCUGG---------------GGCU--AUGGG-UUGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 28770 0.73 0.284094
Target:  5'- uCGCCGGugCCgacgaGGUACCCGccggucgcuacGCCAUCg -3'
miRNA:   3'- cGCGGCCugGGg----CUAUGGGU-----------UGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 34876 0.73 0.297975
Target:  5'- gGUGCCGGACCggGGUGCCUcgggcaggacgGGCCGCUc -3'
miRNA:   3'- -CGCGGCCUGGggCUAUGGG-----------UUGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 6099 0.72 0.30511
Target:  5'- aCGCCGaGAUCgCCGAgGCCgaGGCCGCCg -3'
miRNA:   3'- cGCGGC-CUGG-GGCUaUGGg-UUGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 45627 0.72 0.312375
Target:  5'- cCGCCGGGCCgggcagcgcgCCGGUGCCgCcgugaacACCGCCg -3'
miRNA:   3'- cGCGGCCUGG----------GGCUAUGG-Gu------UGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 33586 0.72 0.326539
Target:  5'- cGCGUcgCGGGCCaCCGAggcgcggucgagcUGCaaCCGGCCACCg -3'
miRNA:   3'- -CGCG--GCCUGG-GGCU-------------AUG--GGUUGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 9947 0.72 0.334183
Target:  5'- uGCGCC--ACCaaucgagCCGAccGCCCGACCACCg -3'
miRNA:   3'- -CGCGGccUGG-------GGCUa-UGGGUUGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 63666 0.72 0.334955
Target:  5'- aCGCCGGACaCCuCGGgcaCCGGCgCGCCg -3'
miRNA:   3'- cGCGGCCUG-GG-GCUaugGGUUG-GUGG- -5'
23476 3' -58.3 NC_005259.1 + 46787 0.72 0.334955
Target:  5'- cCGCCGGGCCgaacaCCGAgccUGCgagcgcaccaCCGGCCACCu -3'
miRNA:   3'- cGCGGCCUGG-----GGCU---AUG----------GGUUGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 29678 0.72 0.335728
Target:  5'- uUGCCGGACgcgccgcaaucgagaCCGAUGCCgAGgCACCg -3'
miRNA:   3'- cGCGGCCUGg--------------GGCUAUGGgUUgGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.