miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23476 5' -60.7 NC_005259.1 + 14307 0.69 0.290168
Target:  5'- -cGGUGCgUAUGGccgcccucgacGCCGCCGCCCGc -3'
miRNA:   3'- aaCCACGaGUACCac---------CGGUGGCGGGU- -5'
23476 5' -60.7 NC_005259.1 + 65852 0.66 0.450426
Target:  5'- ----aGC-CAUGGUGGCCuccguCUGCCCc -3'
miRNA:   3'- aaccaCGaGUACCACCGGu----GGCGGGu -5'
23476 5' -60.7 NC_005259.1 + 47955 0.66 0.413129
Target:  5'- -cGGUGCcgAUGGccGCCgcGCCGCCCGc -3'
miRNA:   3'- aaCCACGagUACCacCGG--UGGCGGGU- -5'
23476 5' -60.7 NC_005259.1 + 63549 0.67 0.404107
Target:  5'- -aGGUGCUC--GGcGGCCACCGaCgCGa -3'
miRNA:   3'- aaCCACGAGuaCCaCCGGUGGC-GgGU- -5'
23476 5' -60.7 NC_005259.1 + 44509 0.67 0.404107
Target:  5'- -gGGUGC-CcUGGccacccacGCCGCCGCCCGg -3'
miRNA:   3'- aaCCACGaGuACCac------CGGUGGCGGGU- -5'
23476 5' -60.7 NC_005259.1 + 23731 0.67 0.377799
Target:  5'- -cGGUGCUCAcgUGGgacGGCgACCccgacGCCCc -3'
miRNA:   3'- aaCCACGAGU--ACCa--CCGgUGG-----CGGGu -5'
23476 5' -60.7 NC_005259.1 + 13679 0.68 0.351851
Target:  5'- -gGuGUGCUCGUGGacccgUGGCCGgucgaccCCGCCUc -3'
miRNA:   3'- aaC-CACGAGUACC-----ACCGGU-------GGCGGGu -5'
23476 5' -60.7 NC_005259.1 + 53691 0.68 0.344559
Target:  5'- aUGGUGCgaccggucaaCGUGaacGUGGUCACCGCgCCGc -3'
miRNA:   3'- aACCACGa---------GUAC---CACCGGUGGCG-GGU- -5'
23476 5' -60.7 NC_005259.1 + 41670 0.68 0.313473
Target:  5'- -gGGaucUGCaccgCGUGcGUGGCCACCGCgCAc -3'
miRNA:   3'- aaCC---ACGa---GUAC-CACCGGUGGCGgGU- -5'
23476 5' -60.7 NC_005259.1 + 56091 0.77 0.077508
Target:  5'- -cGGUGCUCGUcGG-GGCCACCGCguggCCAc -3'
miRNA:   3'- aaCCACGAGUA-CCaCCGGUGGCG----GGU- -5'
23476 5' -60.7 NC_005259.1 + 7958 0.69 0.284558
Target:  5'- -cGGcUGCU--UGGUGGCC-CaCGCCCAc -3'
miRNA:   3'- aaCC-ACGAguACCACCGGuG-GCGGGU- -5'
23476 5' -60.7 NC_005259.1 + 15555 0.69 0.277667
Target:  5'- -cGGUGCcacccUCA-GGUGGCCACC-CUCGg -3'
miRNA:   3'- aaCCACG-----AGUaCCACCGGUGGcGGGU- -5'
23476 5' -60.7 NC_005259.1 + 4486 0.69 0.277667
Target:  5'- -cGGUGgacCAUGGUGaucGCCACCGCgCCGg -3'
miRNA:   3'- aaCCACga-GUACCAC---CGGUGGCG-GGU- -5'
23476 5' -60.7 NC_005259.1 + 25245 0.7 0.266918
Target:  5'- gUUGGUGCUCAUGcaccccaccgaguacGgcacgaUGGCCACCGUgCAc -3'
miRNA:   3'- -AACCACGAGUAC---------------C------ACCGGUGGCGgGU- -5'
23476 5' -60.7 NC_005259.1 + 45487 0.7 0.25143
Target:  5'- cUGGccGCUgGUGGccuuggucgcugUGGCCACCGCgCCGg -3'
miRNA:   3'- aACCa-CGAgUACC------------ACCGGUGGCG-GGU- -5'
23476 5' -60.7 NC_005259.1 + 12991 0.7 0.245198
Target:  5'- gUGGUGCUCGcguucgcacucGGcuacGCCGCCGCCCGg -3'
miRNA:   3'- aACCACGAGUa----------CCac--CGGUGGCGGGU- -5'
23476 5' -60.7 NC_005259.1 + 27472 0.7 0.23312
Target:  5'- aUUGGggccggGgUCGguGUGGCCACCGCCCc -3'
miRNA:   3'- -AACCa-----CgAGUacCACCGGUGGCGGGu -5'
23476 5' -60.7 NC_005259.1 + 15050 0.71 0.194741
Target:  5'- -gGGUGC-CAUGGccgauaccgUGGCCACCcugGCCCu -3'
miRNA:   3'- aaCCACGaGUACC---------ACCGGUGG---CGGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.