miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23477 5' -61.6 NC_005259.1 + 17349 0.66 0.467926
Target:  5'- gUCGCCGucgaggucGGCGGCUCGgcgcugGUCGuGGUc -3'
miRNA:   3'- gAGCGGC--------CCGUCGAGCag----CAGC-CCAa -5'
23477 5' -61.6 NC_005259.1 + 45774 0.66 0.458466
Target:  5'- cCUCGCCGGGUgccAGCaccgCGUUGacgguguccugcUUGGGUg -3'
miRNA:   3'- -GAGCGGCCCG---UCGa---GCAGC------------AGCCCAa -5'
23477 5' -61.6 NC_005259.1 + 64212 0.66 0.439856
Target:  5'- cCUCGCCGgucGGCAGCcCGguaUCGGGg- -3'
miRNA:   3'- -GAGCGGC---CCGUCGaGCagcAGCCCaa -5'
23477 5' -61.6 NC_005259.1 + 3331 0.67 0.412771
Target:  5'- -gCGCCGGGCAGCUCugcgUGcUCGGc-- -3'
miRNA:   3'- gaGCGGCCCGUCGAGca--GC-AGCCcaa -5'
23477 5' -61.6 NC_005259.1 + 58689 0.67 0.395296
Target:  5'- aUCGCgGGGuCGGCUCGUCGcCGc--- -3'
miRNA:   3'- gAGCGgCCC-GUCGAGCAGCaGCccaa -5'
23477 5' -61.6 NC_005259.1 + 61067 0.68 0.345828
Target:  5'- -gUGCCGGGCaucGGCauaggCGUCGUCGGc-- -3'
miRNA:   3'- gaGCGGCCCG---UCGa----GCAGCAGCCcaa -5'
23477 5' -61.6 NC_005259.1 + 40132 0.69 0.308115
Target:  5'- aUUGgCGGGCgAGCUCGcCGUCGGu-- -3'
miRNA:   3'- gAGCgGCCCG-UCGAGCaGCAGCCcaa -5'
23477 5' -61.6 NC_005259.1 + 58913 0.69 0.287035
Target:  5'- gCUCGUCGG-CGGuCUUGUCGUCGGcGg- -3'
miRNA:   3'- -GAGCGGCCcGUC-GAGCAGCAGCC-Caa -5'
23477 5' -61.6 NC_005259.1 + 11316 0.69 0.273624
Target:  5'- -cCGagaCGGGCgcgcAGCUCGUCGUCGGu-- -3'
miRNA:   3'- gaGCg--GCCCG----UCGAGCAGCAGCCcaa -5'
23477 5' -61.6 NC_005259.1 + 49555 0.7 0.242297
Target:  5'- -gUGCCGGGCuGUUCGUCgGUCGuGGc- -3'
miRNA:   3'- gaGCGGCCCGuCGAGCAG-CAGC-CCaa -5'
23477 5' -61.6 NC_005259.1 + 61912 0.7 0.236402
Target:  5'- gUCGCCGGucgucgucgGCAGCUCGgucucUCGcgCGGGUg -3'
miRNA:   3'- gAGCGGCC---------CGUCGAGC-----AGCa-GCCCAa -5'
23477 5' -61.6 NC_005259.1 + 67429 0.71 0.224973
Target:  5'- -gUGCCGGGCucacGCUUGagcgCGUCGGGg- -3'
miRNA:   3'- gaGCGGCCCGu---CGAGCa---GCAGCCCaa -5'
23477 5' -61.6 NC_005259.1 + 58970 0.72 0.179219
Target:  5'- --gGUCGGGCAGCUCGUCGgcgaCGGcGa- -3'
miRNA:   3'- gagCGGCCCGUCGAGCAGCa---GCC-Caa -5'
23477 5' -61.6 NC_005259.1 + 56025 0.74 0.131145
Target:  5'- cCUCGCCGGGCGGgacuucCUCGggCGgcugCGGGUa -3'
miRNA:   3'- -GAGCGGCCCGUC------GAGCa-GCa---GCCCAa -5'
23477 5' -61.6 NC_005259.1 + 60281 0.78 0.066894
Target:  5'- -cUGCCGGGCGGCcaUCGUCGUCGGu-- -3'
miRNA:   3'- gaGCGGCCCGUCG--AGCAGCAGCCcaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.