miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23478 3' -57.4 NC_005259.1 + 17756 0.66 0.660176
Target:  5'- cCGUGaGGcCGCcGCGCGCcgGGCCGAg -3'
miRNA:   3'- aGCAUgUCuGCGuCGCGCG--CUGGCUa -5'
23478 3' -57.4 NC_005259.1 + 66205 0.66 0.660176
Target:  5'- aCGgguCAGGCGCGGU-CGCG-CCGAc -3'
miRNA:   3'- aGCau-GUCUGCGUCGcGCGCuGGCUa -5'
23478 3' -57.4 NC_005259.1 + 36195 0.66 0.638773
Target:  5'- gCGUACuGAUGCccaugcucgacAGCGCGauGCCGAg -3'
miRNA:   3'- aGCAUGuCUGCG-----------UCGCGCgcUGGCUa -5'
23478 3' -57.4 NC_005259.1 + 57867 0.67 0.617346
Target:  5'- -gGUGCGacacccucgauGugGCGGUGCGCGACaGAc -3'
miRNA:   3'- agCAUGU-----------CugCGUCGCGCGCUGgCUa -5'
23478 3' -57.4 NC_005259.1 + 66100 0.67 0.606647
Target:  5'- -gGUGCAG-CGCA-CGCGCGACUu-- -3'
miRNA:   3'- agCAUGUCuGCGUcGCGCGCUGGcua -5'
23478 3' -57.4 NC_005259.1 + 42409 0.67 0.595968
Target:  5'- gUCGUACucgauGGCGguGCG-GCaGCCGAa -3'
miRNA:   3'- -AGCAUGu----CUGCguCGCgCGcUGGCUa -5'
23478 3' -57.4 NC_005259.1 + 6512 0.67 0.585319
Target:  5'- aUCG-ACcGACGCcguGCGCGCGAcaaCCGGc -3'
miRNA:   3'- -AGCaUGuCUGCGu--CGCGCGCU---GGCUa -5'
23478 3' -57.4 NC_005259.1 + 58771 0.67 0.585319
Target:  5'- aCGcUGCGGGCGCuGUGCGcCGGUCGAg -3'
miRNA:   3'- aGC-AUGUCUGCGuCGCGC-GCUGGCUa -5'
23478 3' -57.4 NC_005259.1 + 67954 0.68 0.557823
Target:  5'- -gGUGCGGguugugcuguagcgcGCGCAGCgGCGUGGCCa-- -3'
miRNA:   3'- agCAUGUC---------------UGCGUCG-CGCGCUGGcua -5'
23478 3' -57.4 NC_005259.1 + 44155 0.68 0.553623
Target:  5'- aCGUGCGGuCG-AGCaGCGCG-CCGGUg -3'
miRNA:   3'- aGCAUGUCuGCgUCG-CGCGCuGGCUA- -5'
23478 3' -57.4 NC_005259.1 + 58929 0.68 0.543167
Target:  5'- gUCGUcgGCGGGCGCGGUggcaGCGuCGGCCu-- -3'
miRNA:   3'- -AGCA--UGUCUGCGUCG----CGC-GCUGGcua -5'
23478 3' -57.4 NC_005259.1 + 44559 0.68 0.543167
Target:  5'- cCG-GCAG--GCAGCGCGCcGACCGGc -3'
miRNA:   3'- aGCaUGUCugCGUCGCGCG-CUGGCUa -5'
23478 3' -57.4 NC_005259.1 + 43777 0.68 0.512217
Target:  5'- aCGUACucgccGGGCaugaGCAGCGCGgGcACCGAg -3'
miRNA:   3'- aGCAUG-----UCUG----CGUCGCGCgC-UGGCUa -5'
23478 3' -57.4 NC_005259.1 + 51664 0.68 0.50916
Target:  5'- cCGcGCGGGCGCgucgggcacgGGCGCGCGauggucucauagguGCCGAa -3'
miRNA:   3'- aGCaUGUCUGCG----------UCGCGCGC--------------UGGCUa -5'
23478 3' -57.4 NC_005259.1 + 16484 0.69 0.482019
Target:  5'- cCGUcaaGGGCGCAcccGCGCGCauGGCCGAg -3'
miRNA:   3'- aGCAug-UCUGCGU---CGCGCG--CUGGCUa -5'
23478 3' -57.4 NC_005259.1 + 66917 0.69 0.472144
Target:  5'- cCG-GCAGcGCGCGGUGCuCGACCGGg -3'
miRNA:   3'- aGCaUGUC-UGCGUCGCGcGCUGGCUa -5'
23478 3' -57.4 NC_005259.1 + 16097 0.7 0.397171
Target:  5'- aUCGUGgAGAUGUaccGGCGCGgaaUGACCGAc -3'
miRNA:   3'- -AGCAUgUCUGCG---UCGCGC---GCUGGCUa -5'
23478 3' -57.4 NC_005259.1 + 35325 0.71 0.354369
Target:  5'- gUGUACGcgaccccGCGUAGCGCGUGAUCGAg -3'
miRNA:   3'- aGCAUGUc------UGCGUCGCGCGCUGGCUa -5'
23478 3' -57.4 NC_005259.1 + 66239 0.73 0.272093
Target:  5'- gUCGUGCAgccaucGACGCAGCGCGgccCGcGCCGGg -3'
miRNA:   3'- -AGCAUGU------CUGCGUCGCGC---GC-UGGCUa -5'
23478 3' -57.4 NC_005259.1 + 65772 0.75 0.216784
Target:  5'- cCGUACAGAuCGCAGUGCGCcauGGCCu-- -3'
miRNA:   3'- aGCAUGUCU-GCGUCGCGCG---CUGGcua -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.