Results 1 - 20 of 20 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23478 | 3' | -57.4 | NC_005259.1 | + | 17756 | 0.66 | 0.660176 |
Target: 5'- cCGUGaGGcCGCcGCGCGCcgGGCCGAg -3' miRNA: 3'- aGCAUgUCuGCGuCGCGCG--CUGGCUa -5' |
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23478 | 3' | -57.4 | NC_005259.1 | + | 66205 | 0.66 | 0.660176 |
Target: 5'- aCGgguCAGGCGCGGU-CGCG-CCGAc -3' miRNA: 3'- aGCau-GUCUGCGUCGcGCGCuGGCUa -5' |
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23478 | 3' | -57.4 | NC_005259.1 | + | 36195 | 0.66 | 0.638773 |
Target: 5'- gCGUACuGAUGCccaugcucgacAGCGCGauGCCGAg -3' miRNA: 3'- aGCAUGuCUGCG-----------UCGCGCgcUGGCUa -5' |
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23478 | 3' | -57.4 | NC_005259.1 | + | 57867 | 0.67 | 0.617346 |
Target: 5'- -gGUGCGacacccucgauGugGCGGUGCGCGACaGAc -3' miRNA: 3'- agCAUGU-----------CugCGUCGCGCGCUGgCUa -5' |
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23478 | 3' | -57.4 | NC_005259.1 | + | 66100 | 0.67 | 0.606647 |
Target: 5'- -gGUGCAG-CGCA-CGCGCGACUu-- -3' miRNA: 3'- agCAUGUCuGCGUcGCGCGCUGGcua -5' |
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23478 | 3' | -57.4 | NC_005259.1 | + | 42409 | 0.67 | 0.595968 |
Target: 5'- gUCGUACucgauGGCGguGCG-GCaGCCGAa -3' miRNA: 3'- -AGCAUGu----CUGCguCGCgCGcUGGCUa -5' |
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23478 | 3' | -57.4 | NC_005259.1 | + | 6512 | 0.67 | 0.585319 |
Target: 5'- aUCG-ACcGACGCcguGCGCGCGAcaaCCGGc -3' miRNA: 3'- -AGCaUGuCUGCGu--CGCGCGCU---GGCUa -5' |
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23478 | 3' | -57.4 | NC_005259.1 | + | 58771 | 0.67 | 0.585319 |
Target: 5'- aCGcUGCGGGCGCuGUGCGcCGGUCGAg -3' miRNA: 3'- aGC-AUGUCUGCGuCGCGC-GCUGGCUa -5' |
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23478 | 3' | -57.4 | NC_005259.1 | + | 67954 | 0.68 | 0.557823 |
Target: 5'- -gGUGCGGguugugcuguagcgcGCGCAGCgGCGUGGCCa-- -3' miRNA: 3'- agCAUGUC---------------UGCGUCG-CGCGCUGGcua -5' |
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23478 | 3' | -57.4 | NC_005259.1 | + | 44155 | 0.68 | 0.553623 |
Target: 5'- aCGUGCGGuCG-AGCaGCGCG-CCGGUg -3' miRNA: 3'- aGCAUGUCuGCgUCG-CGCGCuGGCUA- -5' |
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23478 | 3' | -57.4 | NC_005259.1 | + | 58929 | 0.68 | 0.543167 |
Target: 5'- gUCGUcgGCGGGCGCGGUggcaGCGuCGGCCu-- -3' miRNA: 3'- -AGCA--UGUCUGCGUCG----CGC-GCUGGcua -5' |
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23478 | 3' | -57.4 | NC_005259.1 | + | 44559 | 0.68 | 0.543167 |
Target: 5'- cCG-GCAG--GCAGCGCGCcGACCGGc -3' miRNA: 3'- aGCaUGUCugCGUCGCGCG-CUGGCUa -5' |
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23478 | 3' | -57.4 | NC_005259.1 | + | 43777 | 0.68 | 0.512217 |
Target: 5'- aCGUACucgccGGGCaugaGCAGCGCGgGcACCGAg -3' miRNA: 3'- aGCAUG-----UCUG----CGUCGCGCgC-UGGCUa -5' |
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23478 | 3' | -57.4 | NC_005259.1 | + | 51664 | 0.68 | 0.50916 |
Target: 5'- cCGcGCGGGCGCgucgggcacgGGCGCGCGauggucucauagguGCCGAa -3' miRNA: 3'- aGCaUGUCUGCG----------UCGCGCGC--------------UGGCUa -5' |
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23478 | 3' | -57.4 | NC_005259.1 | + | 16484 | 0.69 | 0.482019 |
Target: 5'- cCGUcaaGGGCGCAcccGCGCGCauGGCCGAg -3' miRNA: 3'- aGCAug-UCUGCGU---CGCGCG--CUGGCUa -5' |
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23478 | 3' | -57.4 | NC_005259.1 | + | 66917 | 0.69 | 0.472144 |
Target: 5'- cCG-GCAGcGCGCGGUGCuCGACCGGg -3' miRNA: 3'- aGCaUGUC-UGCGUCGCGcGCUGGCUa -5' |
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23478 | 3' | -57.4 | NC_005259.1 | + | 16097 | 0.7 | 0.397171 |
Target: 5'- aUCGUGgAGAUGUaccGGCGCGgaaUGACCGAc -3' miRNA: 3'- -AGCAUgUCUGCG---UCGCGC---GCUGGCUa -5' |
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23478 | 3' | -57.4 | NC_005259.1 | + | 35325 | 0.71 | 0.354369 |
Target: 5'- gUGUACGcgaccccGCGUAGCGCGUGAUCGAg -3' miRNA: 3'- aGCAUGUc------UGCGUCGCGCGCUGGCUa -5' |
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23478 | 3' | -57.4 | NC_005259.1 | + | 66239 | 0.73 | 0.272093 |
Target: 5'- gUCGUGCAgccaucGACGCAGCGCGgccCGcGCCGGg -3' miRNA: 3'- -AGCAUGU------CUGCGUCGCGC---GC-UGGCUa -5' |
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23478 | 3' | -57.4 | NC_005259.1 | + | 65772 | 0.75 | 0.216784 |
Target: 5'- cCGUACAGAuCGCAGUGCGCcauGGCCu-- -3' miRNA: 3'- aGCAUGUCU-GCGUCGCGCG---CUGGcua -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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