Results 1 - 12 of 12 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23478 | 5' | -59.8 | NC_005259.1 | + | 56673 | 0.66 | 0.546384 |
Target: 5'- -cACGGGcucgUUGCgccacccauacGGCUGCGaGGU-GGCCa -3' miRNA: 3'- caUGUCC----AACG-----------CCGACGC-CCAcCCGG- -5' |
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23478 | 5' | -59.8 | NC_005259.1 | + | 27085 | 0.66 | 0.536102 |
Target: 5'- -gACAuucugcgGCGGCUGCcaugcGGUGGGCUg -3' miRNA: 3'- caUGUccaa---CGCCGACGc----CCACCCGG- -5' |
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23478 | 5' | -59.8 | NC_005259.1 | + | 10338 | 0.67 | 0.456763 |
Target: 5'- -gACGGGcucgGCGGCaGCGGGcucgacaucGGGCUc -3' miRNA: 3'- caUGUCCaa--CGCCGaCGCCCa--------CCCGG- -5' |
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23478 | 5' | -59.8 | NC_005259.1 | + | 67954 | 0.67 | 0.456763 |
Target: 5'- gGUGCGGGUUGUGcuguagcgcgcGCaGCGGcGU-GGCCa -3' miRNA: 3'- -CAUGUCCAACGC-----------CGaCGCC-CAcCCGG- -5' |
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23478 | 5' | -59.8 | NC_005259.1 | + | 51655 | 0.67 | 0.447282 |
Target: 5'- -aACGGGUUGCcGC-GCGGGcgcgucGGGCa -3' miRNA: 3'- caUGUCCAACGcCGaCGCCCa-----CCCGg -5' |
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23478 | 5' | -59.8 | NC_005259.1 | + | 10487 | 0.67 | 0.437912 |
Target: 5'- cUugGGGUcGUGGUUGUugGGGUuguccggcacGGGCCa -3' miRNA: 3'- cAugUCCAaCGCCGACG--CCCA----------CCCGG- -5' |
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23478 | 5' | -59.8 | NC_005259.1 | + | 27992 | 0.68 | 0.419515 |
Target: 5'- ---uGGGUggUGCGGgUGcCGGGgcgGGGUCg -3' miRNA: 3'- caugUCCA--ACGCCgAC-GCCCa--CCCGG- -5' |
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23478 | 5' | -59.8 | NC_005259.1 | + | 18862 | 0.68 | 0.392818 |
Target: 5'- cGUGCAacGGUUGCGcGC-GUGGGa-GGCCa -3' miRNA: 3'- -CAUGU--CCAACGC-CGaCGCCCacCCGG- -5' |
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23478 | 5' | -59.8 | NC_005259.1 | + | 54502 | 0.69 | 0.36725 |
Target: 5'- -gGCGGGcaugGCGGCgaUGUGGGguggcGGGUCg -3' miRNA: 3'- caUGUCCaa--CGCCG--ACGCCCa----CCCGG- -5' |
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23478 | 5' | -59.8 | NC_005259.1 | + | 58552 | 0.69 | 0.350852 |
Target: 5'- ---gAGGUUaCGGCUcggGCGGuUGGGCCg -3' miRNA: 3'- caugUCCAAcGCCGA---CGCCcACCCGG- -5' |
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23478 | 5' | -59.8 | NC_005259.1 | + | 56033 | 0.69 | 0.350046 |
Target: 5'- -gGCGGGacuuccucggGCGGCUGCGGGUacuugauGGcGUCg -3' miRNA: 3'- caUGUCCaa--------CGCCGACGCCCA-------CC-CGG- -5' |
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23478 | 5' | -59.8 | NC_005259.1 | + | 27139 | 0.76 | 0.131281 |
Target: 5'- uUugAGG--GCGGCUGCGGuGUugGGGCCa -3' miRNA: 3'- cAugUCCaaCGCCGACGCC-CA--CCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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