miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23478 5' -59.8 NC_005259.1 + 56673 0.66 0.546384
Target:  5'- -cACGGGcucgUUGCgccacccauacGGCUGCGaGGU-GGCCa -3'
miRNA:   3'- caUGUCC----AACG-----------CCGACGC-CCAcCCGG- -5'
23478 5' -59.8 NC_005259.1 + 27085 0.66 0.536102
Target:  5'- -gACAuucugcgGCGGCUGCcaugcGGUGGGCUg -3'
miRNA:   3'- caUGUccaa---CGCCGACGc----CCACCCGG- -5'
23478 5' -59.8 NC_005259.1 + 10338 0.67 0.456763
Target:  5'- -gACGGGcucgGCGGCaGCGGGcucgacaucGGGCUc -3'
miRNA:   3'- caUGUCCaa--CGCCGaCGCCCa--------CCCGG- -5'
23478 5' -59.8 NC_005259.1 + 67954 0.67 0.456763
Target:  5'- gGUGCGGGUUGUGcuguagcgcgcGCaGCGGcGU-GGCCa -3'
miRNA:   3'- -CAUGUCCAACGC-----------CGaCGCC-CAcCCGG- -5'
23478 5' -59.8 NC_005259.1 + 51655 0.67 0.447282
Target:  5'- -aACGGGUUGCcGC-GCGGGcgcgucGGGCa -3'
miRNA:   3'- caUGUCCAACGcCGaCGCCCa-----CCCGg -5'
23478 5' -59.8 NC_005259.1 + 10487 0.67 0.437912
Target:  5'- cUugGGGUcGUGGUUGUugGGGUuguccggcacGGGCCa -3'
miRNA:   3'- cAugUCCAaCGCCGACG--CCCA----------CCCGG- -5'
23478 5' -59.8 NC_005259.1 + 27992 0.68 0.419515
Target:  5'- ---uGGGUggUGCGGgUGcCGGGgcgGGGUCg -3'
miRNA:   3'- caugUCCA--ACGCCgAC-GCCCa--CCCGG- -5'
23478 5' -59.8 NC_005259.1 + 18862 0.68 0.392818
Target:  5'- cGUGCAacGGUUGCGcGC-GUGGGa-GGCCa -3'
miRNA:   3'- -CAUGU--CCAACGC-CGaCGCCCacCCGG- -5'
23478 5' -59.8 NC_005259.1 + 54502 0.69 0.36725
Target:  5'- -gGCGGGcaugGCGGCgaUGUGGGguggcGGGUCg -3'
miRNA:   3'- caUGUCCaa--CGCCG--ACGCCCa----CCCGG- -5'
23478 5' -59.8 NC_005259.1 + 58552 0.69 0.350852
Target:  5'- ---gAGGUUaCGGCUcggGCGGuUGGGCCg -3'
miRNA:   3'- caugUCCAAcGCCGA---CGCCcACCCGG- -5'
23478 5' -59.8 NC_005259.1 + 56033 0.69 0.350046
Target:  5'- -gGCGGGacuuccucggGCGGCUGCGGGUacuugauGGcGUCg -3'
miRNA:   3'- caUGUCCaa--------CGCCGACGCCCA-------CC-CGG- -5'
23478 5' -59.8 NC_005259.1 + 27139 0.76 0.131281
Target:  5'- uUugAGG--GCGGCUGCGGuGUugGGGCCa -3'
miRNA:   3'- cAugUCCaaCGCCGACGCC-CA--CCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.