Results 1 - 20 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23479 | 3' | -61.7 | NC_005259.1 | + | 9906 | 0.66 | 0.452083 |
Target: 5'- gAGCUUUCGGCCCUcGCGcuggucauugcgguUGAacacguUGCGCCa -3' miRNA: 3'- -UUGGGAGCCGGGGcCGC--------------ACU------ACGUGG- -5' |
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23479 | 3' | -61.7 | NC_005259.1 | + | 19105 | 0.68 | 0.327316 |
Target: 5'- gAACUCacCGGCgCUGGUGUGugcgucGUGCACCa -3' miRNA: 3'- -UUGGGa-GCCGgGGCCGCAC------UACGUGG- -5' |
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23479 | 3' | -61.7 | NC_005259.1 | + | 13452 | 0.68 | 0.342707 |
Target: 5'- uGACCgUCGGCg-CGGCGcUGGUGCucACCg -3' miRNA: 3'- -UUGGgAGCCGggGCCGC-ACUACG--UGG- -5' |
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23479 | 3' | -61.7 | NC_005259.1 | + | 22384 | 0.68 | 0.342707 |
Target: 5'- aAGCCCggUCGGCCUCGGCGacGUG-AUCg -3' miRNA: 3'- -UUGGG--AGCCGGGGCCGCacUACgUGG- -5' |
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23479 | 3' | -61.7 | NC_005259.1 | + | 23859 | 0.68 | 0.350596 |
Target: 5'- uACCCcCGGCacaCCGaGUG-GAUGCGCUa -3' miRNA: 3'- uUGGGaGCCGg--GGC-CGCaCUACGUGG- -5' |
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23479 | 3' | -61.7 | NC_005259.1 | + | 8116 | 0.67 | 0.358613 |
Target: 5'- aGACCCcCGGCCUaguCGGCuacgGGUGCcCCg -3' miRNA: 3'- -UUGGGaGCCGGG---GCCGca--CUACGuGG- -5' |
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23479 | 3' | -61.7 | NC_005259.1 | + | 28065 | 0.67 | 0.375028 |
Target: 5'- cGACCCcugCcGCCacaCGGUGgGGUGCACCu -3' miRNA: 3'- -UUGGGa--GcCGGg--GCCGCaCUACGUGG- -5' |
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23479 | 3' | -61.7 | NC_005259.1 | + | 61853 | 0.67 | 0.383425 |
Target: 5'- gAGCaCCUCGGCCaCCGccucgcgugccGCGUGAU-CACg -3' miRNA: 3'- -UUG-GGAGCCGG-GGC-----------CGCACUAcGUGg -5' |
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23479 | 3' | -61.7 | NC_005259.1 | + | 29441 | 0.67 | 0.400587 |
Target: 5'- --aCCUCGGCCUCagccaGCGUGAccuUGcCGCCc -3' miRNA: 3'- uugGGAGCCGGGGc----CGCACU---AC-GUGG- -5' |
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23479 | 3' | -61.7 | NC_005259.1 | + | 11715 | 0.68 | 0.319072 |
Target: 5'- -uCCCUgGGCCaCGGCGaggcucagaucgaUGGUGCGCa -3' miRNA: 3'- uuGGGAgCCGGgGCCGC-------------ACUACGUGg -5' |
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23479 | 3' | -61.7 | NC_005259.1 | + | 27531 | 0.69 | 0.305201 |
Target: 5'- cGCCgUCgaGGCCCCacGGCGgGAUGUugCg -3' miRNA: 3'- uUGGgAG--CCGGGG--CCGCaCUACGugG- -5' |
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23479 | 3' | -61.7 | NC_005259.1 | + | 9394 | 0.69 | 0.305201 |
Target: 5'- cAACgCacgCGcGCCCCGGUacgGGUGCGCCa -3' miRNA: 3'- -UUGgGa--GC-CGGGGCCGca-CUACGUGG- -5' |
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23479 | 3' | -61.7 | NC_005259.1 | + | 64804 | 0.72 | 0.186547 |
Target: 5'- uGugCCUCGGCCUCGGCGgcaaugagcgugUGGUGacggACCc -3' miRNA: 3'- -UugGGAGCCGGGGCCGC------------ACUACg---UGG- -5' |
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23479 | 3' | -61.7 | NC_005259.1 | + | 8764 | 0.71 | 0.20133 |
Target: 5'- aGGCCCUUGGCCagcgCGGCgGUGAUGaGCUc -3' miRNA: 3'- -UUGGGAGCCGGg---GCCG-CACUACgUGG- -5' |
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23479 | 3' | -61.7 | NC_005259.1 | + | 31175 | 0.71 | 0.222617 |
Target: 5'- cGCCCUUGaGCCaguCGGCGagGAUGcCGCCg -3' miRNA: 3'- uUGGGAGC-CGGg--GCCGCa-CUAC-GUGG- -5' |
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23479 | 3' | -61.7 | NC_005259.1 | + | 67760 | 0.7 | 0.25127 |
Target: 5'- cGCCC-CGGCCaCCGGCcaccgaccacgcgGUGAccuuguugGCACCg -3' miRNA: 3'- uUGGGaGCCGG-GGCCG-------------CACUa-------CGUGG- -5' |
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23479 | 3' | -61.7 | NC_005259.1 | + | 63671 | 0.7 | 0.251885 |
Target: 5'- gGACaCCUCGGgCaCCGGCGcgccgggGAucUGCGCCu -3' miRNA: 3'- -UUG-GGAGCCgG-GGCCGCa------CU--ACGUGG- -5' |
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23479 | 3' | -61.7 | NC_005259.1 | + | 12173 | 0.7 | 0.257478 |
Target: 5'- cGCCCUCGGUCgaaccugCCGGacCGUGGucguguagagaUGCACCg -3' miRNA: 3'- uUGGGAGCCGG-------GGCC--GCACU-----------ACGUGG- -5' |
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23479 | 3' | -61.7 | NC_005259.1 | + | 4693 | 0.69 | 0.28425 |
Target: 5'- cGACagCUCGGCCCCGugguGCGaUGAccGCGCCc -3' miRNA: 3'- -UUGg-GAGCCGGGGC----CGC-ACUa-CGUGG- -5' |
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23479 | 3' | -61.7 | NC_005259.1 | + | 48046 | 0.69 | 0.291105 |
Target: 5'- cACCCcggUGGCCaCGGCG-GGUaGCGCCg -3' miRNA: 3'- uUGGGa--GCCGGgGCCGCaCUA-CGUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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