Results 41 - 47 of 47 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
|
Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 23479 | 5' | -50.9 | NC_005259.1 | + | 24415 | 0.68 | 0.904925 |
|
Target: 5'- -cAAUGaCcUCGGCGaGGAAgCGACAGCg -3' miRNA: 3'- ucUUAC-GcAGCUGC-CUUUgGCUGUCG- -5' |
|||||||
| 23479 | 5' | -50.9 | NC_005259.1 | + | 47181 | 0.68 | 0.904925 |
|
Target: 5'- cGAAg--GUCGGCGGu-GCCGuCGGCg -3' miRNA: 3'- uCUUacgCAGCUGCCuuUGGCuGUCG- -5' |
|||||||
| 23479 | 5' | -50.9 | NC_005259.1 | + | 65115 | 0.68 | 0.883504 |
|
Target: 5'- -cAGUGCGUCaccguCGGcgcACCGGCGGCc -3' miRNA: 3'- ucUUACGCAGcu---GCCuu-UGGCUGUCG- -5' |
|||||||
| 23479 | 5' | -50.9 | NC_005259.1 | + | 63549 | 0.69 | 0.867912 |
|
Target: 5'- -aGGUGC-UCGGCGGccACCGAC-GCg -3' miRNA: 3'- ucUUACGcAGCUGCCuuUGGCUGuCG- -5' |
|||||||
| 23479 | 5' | -50.9 | NC_005259.1 | + | 53362 | 0.69 | 0.867912 |
|
Target: 5'- ----cGCcUCGACGGcuAAACCGAgaCAGCa -3' miRNA: 3'- ucuuaCGcAGCUGCC--UUUGGCU--GUCG- -5' |
|||||||
| 23479 | 5' | -50.9 | NC_005259.1 | + | 55551 | 0.69 | 0.85974 |
|
Target: 5'- ----gGCGUCGA-GGAuGCCGAaAGCg -3' miRNA: 3'- ucuuaCGCAGCUgCCUuUGGCUgUCG- -5' |
|||||||
| 23479 | 5' | -50.9 | NC_005259.1 | + | 3311 | 0.77 | 0.416281 |
|
Target: 5'- cGAGcgcUGCGUCGACGuGAGcGCCGgGCAGCu -3' miRNA: 3'- uCUU---ACGCAGCUGC-CUU-UGGC-UGUCG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home