miRNA display CGI


Results 21 - 40 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23479 5' -50.9 NC_005259.1 + 43648 0.67 0.937239
Target:  5'- aAGAAaucUGCGcCGACGGugucguuGCCGAUcacaccgccgccgguGGCg -3'
miRNA:   3'- -UCUU---ACGCaGCUGCCuu-----UGGCUG---------------UCG- -5'
23479 5' -50.9 NC_005259.1 + 43949 0.67 0.93351
Target:  5'- ----aGCGUCGGCgauGGGcggggccgccgccuGACCGAgGGCg -3'
miRNA:   3'- ucuuaCGCAGCUG---CCU--------------UUGGCUgUCG- -5'
23479 5' -50.9 NC_005259.1 + 21624 0.67 0.929643
Target:  5'- gAGGcUGUGUCGcGCGGAGuguucGCCGA-GGCu -3'
miRNA:   3'- -UCUuACGCAGC-UGCCUU-----UGGCUgUCG- -5'
23479 5' -50.9 NC_005259.1 + 61603 0.67 0.923882
Target:  5'- cGGug-GgGUCGGCGGGgaacagcaGACCGGCAccGCc -3'
miRNA:   3'- -UCuuaCgCAGCUGCCU--------UUGGCUGU--CG- -5'
23479 5' -50.9 NC_005259.1 + 8315 0.67 0.911521
Target:  5'- ----cGCcUUGuCGGAGcuGCCGACGGCg -3'
miRNA:   3'- ucuuaCGcAGCuGCCUU--UGGCUGUCG- -5'
23479 5' -50.9 NC_005259.1 + 36369 0.67 0.911521
Target:  5'- gGGAuUGCGUCGaaGCGGcgAGGuuGGcCAGCg -3'
miRNA:   3'- -UCUuACGCAGC--UGCC--UUUggCU-GUCG- -5'
23479 5' -50.9 NC_005259.1 + 23615 0.67 0.911521
Target:  5'- ----cGCGU-GGCGGcAGCCaGACGGCu -3'
miRNA:   3'- ucuuaCGCAgCUGCCuUUGG-CUGUCG- -5'
23479 5' -50.9 NC_005259.1 + 3065 0.67 0.911521
Target:  5'- -----cCGUCGACGGGccgaGGCCGACAa- -3'
miRNA:   3'- ucuuacGCAGCUGCCU----UUGGCUGUcg -5'
23479 5' -50.9 NC_005259.1 + 24415 0.68 0.904925
Target:  5'- -cAAUGaCcUCGGCGaGGAAgCGACAGCg -3'
miRNA:   3'- ucUUAC-GcAGCUGC-CUUUgGCUGUCG- -5'
23479 5' -50.9 NC_005259.1 + 47181 0.68 0.904925
Target:  5'- cGAAg--GUCGGCGGu-GCCGuCGGCg -3'
miRNA:   3'- uCUUacgCAGCUGCCuuUGGCuGUCG- -5'
23479 5' -50.9 NC_005259.1 + 65115 0.68 0.883504
Target:  5'- -cAGUGCGUCaccguCGGcgcACCGGCGGCc -3'
miRNA:   3'- ucUUACGCAGcu---GCCuu-UGGCUGUCG- -5'
23479 5' -50.9 NC_005259.1 + 53362 0.69 0.867912
Target:  5'- ----cGCcUCGACGGcuAAACCGAgaCAGCa -3'
miRNA:   3'- ucuuaCGcAGCUGCC--UUUGGCU--GUCG- -5'
23479 5' -50.9 NC_005259.1 + 63549 0.69 0.867912
Target:  5'- -aGGUGC-UCGGCGGccACCGAC-GCg -3'
miRNA:   3'- ucUUACGcAGCUGCCuuUGGCUGuCG- -5'
23479 5' -50.9 NC_005259.1 + 55551 0.69 0.85974
Target:  5'- ----gGCGUCGA-GGAuGCCGAaAGCg -3'
miRNA:   3'- ucuuaCGCAGCUgCCUuUGGCUgUCG- -5'
23479 5' -50.9 NC_005259.1 + 67211 0.69 0.842683
Target:  5'- ----cGCuGUCGGCGGGGucgauGCCGACcacGGCg -3'
miRNA:   3'- ucuuaCG-CAGCUGCCUU-----UGGCUG---UCG- -5'
23479 5' -50.9 NC_005259.1 + 9152 0.69 0.833814
Target:  5'- --cGUGCccGUCGACGGcauGCCGgugGCAGCc -3'
miRNA:   3'- ucuUACG--CAGCUGCCuu-UGGC---UGUCG- -5'
23479 5' -50.9 NC_005259.1 + 58922 0.7 0.786449
Target:  5'- cGGucuUGuCGUCGGCGGgcGCggUGGCAGCg -3'
miRNA:   3'- -UCuu-AC-GCAGCUGCCuuUG--GCUGUCG- -5'
23479 5' -50.9 NC_005259.1 + 53908 0.71 0.755995
Target:  5'- ---uUG-GUCG-CGGAAACCGACGGg -3'
miRNA:   3'- ucuuACgCAGCuGCCUUUGGCUGUCg -5'
23479 5' -50.9 NC_005259.1 + 35974 0.71 0.735033
Target:  5'- ----cGCuGUcaaCGGCgGGAAACCGACGGCg -3'
miRNA:   3'- ucuuaCG-CA---GCUG-CCUUUGGCUGUCG- -5'
23479 5' -50.9 NC_005259.1 + 10625 0.72 0.72439
Target:  5'- uGggUGCGUCGA----GGCCGaACAGCu -3'
miRNA:   3'- uCuuACGCAGCUgccuUUGGC-UGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.