miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23480 5' -57.4 NC_005259.1 + 10756 0.66 0.670684
Target:  5'- --cGGGCGAUCAucaUGucGGGCGGGUcaUCGa -3'
miRNA:   3'- ccaCUCGCUGGU---ACu-CCUGCCCG--AGC- -5'
23480 5' -57.4 NC_005259.1 + 58220 0.67 0.596689
Target:  5'- gGGUcAGUGGCCucGAGcuCGGGCUCGg -3'
miRNA:   3'- -CCAcUCGCUGGuaCUCcuGCCCGAGC- -5'
23480 5' -57.4 NC_005259.1 + 51142 0.67 0.607243
Target:  5'- --gGGGCGGCCAUGAGcGcguuCGGGUUg- -3'
miRNA:   3'- ccaCUCGCUGGUACUC-Cu---GCCCGAgc -5'
23480 5' -57.4 NC_005259.1 + 17816 0.67 0.637931
Target:  5'- cGGUGAGCucagcgaGGCCAUcGAcGGGUGGGC-CGa -3'
miRNA:   3'- -CCACUCG-------CUGGUA-CU-CCUGCCCGaGC- -5'
23480 5' -57.4 NC_005259.1 + 20022 0.67 0.63899
Target:  5'- -----aUGACC--GAGGACGGGCUCa -3'
miRNA:   3'- ccacucGCUGGuaCUCCUGCCCGAGc -5'
23480 5' -57.4 NC_005259.1 + 22078 0.68 0.554828
Target:  5'- uGGUGAGCucaucGACCA-GAuGGCGGGCa-- -3'
miRNA:   3'- -CCACUCG-----CUGGUaCUcCUGCCCGagc -5'
23480 5' -57.4 NC_005259.1 + 9033 0.69 0.524003
Target:  5'- cGGUGcuCGAUCAUGugcGGGGCGGuaaccgGCUCGg -3'
miRNA:   3'- -CCACucGCUGGUAC---UCCUGCC------CGAGC- -5'
23480 5' -57.4 NC_005259.1 + 51773 0.7 0.426889
Target:  5'- cGGcGAGCG-CCuUGAGGuauuCGGcGCUCGg -3'
miRNA:   3'- -CCaCUCGCuGGuACUCCu---GCC-CGAGC- -5'
23480 5' -57.4 NC_005259.1 + 796 0.71 0.399879
Target:  5'- cGGuUGGGUGGCCAaGGGGcCGGGUgUCGa -3'
miRNA:   3'- -CC-ACUCGCUGGUaCUCCuGCCCG-AGC- -5'
23480 5' -57.4 NC_005259.1 + 53506 0.72 0.349253
Target:  5'- cGGUGAacaacgugcucGUGGCCAgc-GGcACGGGCUCGg -3'
miRNA:   3'- -CCACU-----------CGCUGGUacuCC-UGCCCGAGC- -5'
23480 5' -57.4 NC_005259.1 + 8948 0.74 0.249593
Target:  5'- cGGUGGGCGcGCCGU--GGACGGGCa-- -3'
miRNA:   3'- -CCACUCGC-UGGUAcuCCUGCCCGagc -5'
23480 5' -57.4 NC_005259.1 + 625 0.74 0.284966
Target:  5'- uGGUGAuCGACCGUgacaacgccaccgccGAGGACGuGCUCGa -3'
miRNA:   3'- -CCACUcGCUGGUA---------------CUCCUGCcCGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.