miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23481 3' -55.7 NC_005259.1 + 16541 0.66 0.745251
Target:  5'- aGGGU-GCGCCcgaGCGACCA--GAGAUc -3'
miRNA:   3'- -CCCAgUGCGGaa-CGCUGGUcaCUCUG- -5'
23481 3' -55.7 NC_005259.1 + 44632 0.66 0.734972
Target:  5'- aGGUUGCGCCU--UGACCGGUGccGCc -3'
miRNA:   3'- cCCAGUGCGGAacGCUGGUCACucUG- -5'
23481 3' -55.7 NC_005259.1 + 55898 0.66 0.724593
Target:  5'- gGGGUCGCGCCgggGUcGCUGGccAGACc -3'
miRNA:   3'- -CCCAGUGCGGaa-CGcUGGUCacUCUG- -5'
23481 3' -55.7 NC_005259.1 + 45825 0.66 0.720416
Target:  5'- cGGGgaugacCAUGCCguccgcaccaccGgGGCCGGUGGGACc -3'
miRNA:   3'- -CCCa-----GUGCGGaa----------CgCUGGUCACUCUG- -5'
23481 3' -55.7 NC_005259.1 + 61486 0.67 0.70358
Target:  5'- ---gCACGCUgucGCGACCGuUGAGGCg -3'
miRNA:   3'- cccaGUGCGGaa-CGCUGGUcACUCUG- -5'
23481 3' -55.7 NC_005259.1 + 14805 0.67 0.692968
Target:  5'- ---cCACGCCggGCugauGACCGGUGAGGu -3'
miRNA:   3'- cccaGUGCGGaaCG----CUGGUCACUCUg -5'
23481 3' -55.7 NC_005259.1 + 51249 0.67 0.682298
Target:  5'- -cGUCACGCCgUUGCGGCUcgcGGUGGucacggugcgcGGCa -3'
miRNA:   3'- ccCAGUGCGG-AACGCUGG---UCACU-----------CUG- -5'
23481 3' -55.7 NC_005259.1 + 6636 0.68 0.660833
Target:  5'- cGGGUC-CGCCcgUGaCGACaCGGUcGAGGg -3'
miRNA:   3'- -CCCAGuGCGGa-AC-GCUG-GUCA-CUCUg -5'
23481 3' -55.7 NC_005259.1 + 63284 0.68 0.606887
Target:  5'- cGGGUCgAUGCCUucacgUGCGAgCAGcGGGGu -3'
miRNA:   3'- -CCCAG-UGCGGA-----ACGCUgGUCaCUCUg -5'
23481 3' -55.7 NC_005259.1 + 49357 0.69 0.596125
Target:  5'- aGGUgcCGCGCgaUGaagaGGCCGGUGAGAUc -3'
miRNA:   3'- cCCA--GUGCGgaACg---CUGGUCACUCUG- -5'
23481 3' -55.7 NC_005259.1 + 59065 0.7 0.532443
Target:  5'- gGGGUCAggcucucacCgGCCUUGUGGCgggCAGUGAuGACg -3'
miRNA:   3'- -CCCAGU---------G-CGGAACGCUG---GUCACU-CUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.