miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23481 5' -59.7 NC_005259.1 + 50008 0.66 0.521711
Target:  5'- gCUGcCCUCGUGC----ACGGGCGCu-- -3'
miRNA:   3'- -GAC-GGAGCGCGaccaUGCCCGCGuua -5'
23481 5' -59.7 NC_005259.1 + 50405 0.66 0.49137
Target:  5'- -cGCCgagCGCGCcGGUGCcuugaccggcucGGGCaGCGGUg -3'
miRNA:   3'- gaCGGa--GCGCGaCCAUG------------CCCG-CGUUA- -5'
23481 5' -59.7 NC_005259.1 + 17195 0.66 0.49137
Target:  5'- -aGCCgCGCGUgaggcgGGUAgacgggacUGGGCGCGAg -3'
miRNA:   3'- gaCGGaGCGCGa-----CCAU--------GCCCGCGUUa -5'
23481 5' -59.7 NC_005259.1 + 24333 0.67 0.471603
Target:  5'- -gGCCUcaCGCGCUGGccuaccgcCGGGUGCu-- -3'
miRNA:   3'- gaCGGA--GCGCGACCau------GCCCGCGuua -5'
23481 5' -59.7 NC_005259.1 + 9914 0.67 0.471603
Target:  5'- -gGcCCUCGCGCUGGUcauuGCGGuugaacacguuGCGCc-- -3'
miRNA:   3'- gaC-GGAGCGCGACCA----UGCC-----------CGCGuua -5'
23481 5' -59.7 NC_005259.1 + 64442 0.67 0.452247
Target:  5'- gCUGCCgggGCGCUGcccUugGGGCGgCGAa -3'
miRNA:   3'- -GACGGag-CGCGACc--AugCCCGC-GUUa -5'
23481 5' -59.7 NC_005259.1 + 12020 0.67 0.433333
Target:  5'- -gGCCUUGUaC-GGUGCGGGCGgCAAc -3'
miRNA:   3'- gaCGGAGCGcGaCCAUGCCCGC-GUUa -5'
23481 5' -59.7 NC_005259.1 + 50780 0.67 0.424049
Target:  5'- -gGCCUCGCGCUGGUAguCGGaC-CAu- -3'
miRNA:   3'- gaCGGAGCGCGACCAU--GCCcGcGUua -5'
23481 5' -59.7 NC_005259.1 + 19190 0.68 0.413977
Target:  5'- gUGcCCUCGacaGCgagcucgUGGUGCGGGCgGCGAc -3'
miRNA:   3'- gAC-GGAGCg--CG-------ACCAUGCCCG-CGUUa -5'
23481 5' -59.7 NC_005259.1 + 295 0.68 0.405846
Target:  5'- -gGCCUCGCGCUGaucucgACcggGGGUGCGu- -3'
miRNA:   3'- gaCGGAGCGCGACca----UG---CCCGCGUua -5'
23481 5' -59.7 NC_005259.1 + 34890 0.69 0.338164
Target:  5'- gUGCCUCGgGCaGG-ACGGGcCGCu-- -3'
miRNA:   3'- gACGGAGCgCGaCCaUGCCC-GCGuua -5'
23481 5' -59.7 NC_005259.1 + 51259 0.7 0.314987
Target:  5'- uUGCggCUCGCGgUGGUcACGGuGCGCGGc -3'
miRNA:   3'- gACG--GAGCGCgACCA-UGCC-CGCGUUa -5'
23481 5' -59.7 NC_005259.1 + 51661 0.7 0.307533
Target:  5'- uUGCCgcgcgggCGCGUcgGGcACGGGCGCGc- -3'
miRNA:   3'- gACGGa------GCGCGa-CCaUGCCCGCGUua -5'
23481 5' -59.7 NC_005259.1 + 9397 0.7 0.285983
Target:  5'- -cGCacgCGCGCcccGGUACGGGUGCGc- -3'
miRNA:   3'- gaCGga-GCGCGa--CCAUGCCCGCGUua -5'
23481 5' -59.7 NC_005259.1 + 29949 0.71 0.272289
Target:  5'- -gGCCcggUCGCgGCUGGUgggGCGGGCGguGa -3'
miRNA:   3'- gaCGG---AGCG-CGACCA---UGCCCGCguUa -5'
23481 5' -59.7 NC_005259.1 + 52395 0.72 0.20624
Target:  5'- cCUGCCUCGgGCcaucgaGGUGUGGGCGCu-- -3'
miRNA:   3'- -GACGGAGCgCGa-----CCAUGCCCGCGuua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.