Results 1 - 20 of 20 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23482 | 3' | -59.8 | NC_005259.1 | + | 61068 | 0.78 | 0.10106 |
Target: 5'- uGCCggGCAUCGgcauaGGCGUCgUCGGCCUCGg -3' miRNA: 3'- -UGG--UGUAGUa----CCGCAGgAGCCGGGGC- -5' |
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23482 | 3' | -59.8 | NC_005259.1 | + | 39929 | 0.71 | 0.29786 |
Target: 5'- gGCCGCGUCGaGGuCGUCCUUGGUgaCGa -3' miRNA: 3'- -UGGUGUAGUaCC-GCAGGAGCCGggGC- -5' |
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23482 | 3' | -59.8 | NC_005259.1 | + | 57520 | 0.7 | 0.305018 |
Target: 5'- cACCGCAgcgCuugccgacggcgAUGGCGUCCUCGGUgaacaUCCGc -3' miRNA: 3'- -UGGUGUa--G------------UACCGCAGGAGCCG-----GGGC- -5' |
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23482 | 3' | -59.8 | NC_005259.1 | + | 42631 | 0.7 | 0.312307 |
Target: 5'- gUCGCG-CGUaGGCa-CCUCGGCCCCGa -3' miRNA: 3'- uGGUGUaGUA-CCGcaGGAGCCGGGGC- -5' |
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23482 | 3' | -59.8 | NC_005259.1 | + | 46299 | 0.69 | 0.367002 |
Target: 5'- gGCCGC--CGUGGCugcguuGUUCgCGGCCCCGa -3' miRNA: 3'- -UGGUGuaGUACCG------CAGGaGCCGGGGC- -5' |
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23482 | 3' | -59.8 | NC_005259.1 | + | 31856 | 0.69 | 0.392378 |
Target: 5'- gACCGCGUCAuUGGCGaUCUugUCGGUCgUGa -3' miRNA: 3'- -UGGUGUAGU-ACCGC-AGG--AGCCGGgGC- -5' |
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23482 | 3' | -59.8 | NC_005259.1 | + | 46362 | 0.68 | 0.427937 |
Target: 5'- gGCCGCG--AUGGCaccgCC-CGGCCCCa -3' miRNA: 3'- -UGGUGUagUACCGca--GGaGCCGGGGc -5' |
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23482 | 3' | -59.8 | NC_005259.1 | + | 60132 | 0.67 | 0.455821 |
Target: 5'- gGCCuCGUCcUGcGCGgCCUUGGCCgCCGc -3' miRNA: 3'- -UGGuGUAGuAC-CGCaGGAGCCGG-GGC- -5' |
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23482 | 3' | -59.8 | NC_005259.1 | + | 56385 | 0.67 | 0.462468 |
Target: 5'- gGCCGCGUCGgcugaucgucucgaUGGUG-CC-CGGCCCg- -3' miRNA: 3'- -UGGUGUAGU--------------ACCGCaGGaGCCGGGgc -5' |
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23482 | 3' | -59.8 | NC_005259.1 | + | 49641 | 0.67 | 0.465332 |
Target: 5'- aGCCGCGUCGgcgaUGGCGgCCUCGauacGCgCCUGc -3' miRNA: 3'- -UGGUGUAGU----ACCGCaGGAGC----CG-GGGC- -5' |
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23482 | 3' | -59.8 | NC_005259.1 | + | 68255 | 0.67 | 0.504354 |
Target: 5'- gACCGCAgccuugcgcucgUCGUaGGCaccGUCCUCG-CCCCa -3' miRNA: 3'- -UGGUGU------------AGUA-CCG---CAGGAGCcGGGGc -5' |
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23482 | 3' | -59.8 | NC_005259.1 | + | 65844 | 0.66 | 0.534524 |
Target: 5'- cCCugAUCAgccaUGGUGgCCUCcgucuGCCCCGg -3' miRNA: 3'- uGGugUAGU----ACCGCaGGAGc----CGGGGC- -5' |
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23482 | 3' | -59.8 | NC_005259.1 | + | 9699 | 0.66 | 0.534524 |
Target: 5'- cGCCGC-UCAcugGGCaccGUCCUCGGgCCgGu -3' miRNA: 3'- -UGGUGuAGUa--CCG---CAGGAGCCgGGgC- -5' |
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23482 | 3' | -59.8 | NC_005259.1 | + | 16141 | 0.66 | 0.544725 |
Target: 5'- cGCCAUgcacgacgagGUUGUGGUGUCCacucccgUGGCCgCCGa -3' miRNA: 3'- -UGGUG----------UAGUACCGCAGGa------GCCGG-GGC- -5' |
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23482 | 3' | -59.8 | NC_005259.1 | + | 41134 | 0.66 | 0.544725 |
Target: 5'- cCCGCGUC---GCGcagCCUCaGGCCCCa -3' miRNA: 3'- uGGUGUAGuacCGCa--GGAG-CCGGGGc -5' |
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23482 | 3' | -59.8 | NC_005259.1 | + | 55769 | 0.66 | 0.544725 |
Target: 5'- aGCCGCGUac--GCGUCgagCUCGGCCCg- -3' miRNA: 3'- -UGGUGUAguacCGCAG---GAGCCGGGgc -5' |
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23482 | 3' | -59.8 | NC_005259.1 | + | 64789 | 0.66 | 0.554988 |
Target: 5'- cGCUGCGaC-UGGCugugugCCUCGGCCUCGg -3' miRNA: 3'- -UGGUGUaGuACCGca----GGAGCCGGGGC- -5' |
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23482 | 3' | -59.8 | NC_005259.1 | + | 50754 | 0.66 | 0.554988 |
Target: 5'- cGCCACGc---GGUGUcggacgacaCCUCGGCCUCGc -3' miRNA: 3'- -UGGUGUaguaCCGCA---------GGAGCCGGGGC- -5' |
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23482 | 3' | -59.8 | NC_005259.1 | + | 25471 | 0.66 | 0.565307 |
Target: 5'- gACgACAUCAUGGUGUUCaacaaGGCgCUCGc -3' miRNA: 3'- -UGgUGUAGUACCGCAGGag---CCG-GGGC- -5' |
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23482 | 3' | -59.8 | NC_005259.1 | + | 34068 | 0.66 | 0.565307 |
Target: 5'- gACCACggCGgcGGUGUCCacacguaGGCCCUGu -3' miRNA: 3'- -UGGUGuaGUa-CCGCAGGag-----CCGGGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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