Results 21 - 33 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23483 | 3' | -53.3 | NC_005259.1 | + | 66369 | 0.69 | 0.742755 |
Target: 5'- uCUGCG-CGuGGCacaGCCACGUGcCCAUg -3' miRNA: 3'- cGAUGCaGCuCCG---UGGUGCAUaGGUG- -5' |
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23483 | 3' | -53.3 | NC_005259.1 | + | 52202 | 0.69 | 0.721763 |
Target: 5'- cGC-ACGgcucauGGGCACCGCGU-UCCGCg -3' miRNA: 3'- -CGaUGCagc---UCCGUGGUGCAuAGGUG- -5' |
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23483 | 3' | -53.3 | NC_005259.1 | + | 35619 | 0.69 | 0.70042 |
Target: 5'- cGCUGCGUCGAguaguucgGGcCGCCGCcgcugCCGCu -3' miRNA: 3'- -CGAUGCAGCU--------CC-GUGGUGcaua-GGUG- -5' |
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23483 | 3' | -53.3 | NC_005259.1 | + | 27834 | 0.69 | 0.70042 |
Target: 5'- uCUGCG-CGAGGUagGCCGCGagGUCgCGCg -3' miRNA: 3'- cGAUGCaGCUCCG--UGGUGCa-UAG-GUG- -5' |
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23483 | 3' | -53.3 | NC_005259.1 | + | 53158 | 0.7 | 0.645006 |
Target: 5'- cGCUACGcCGAGGCcgaucucGCCACcg--CCGCc -3' miRNA: 3'- -CGAUGCaGCUCCG-------UGGUGcauaGGUG- -5' |
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23483 | 3' | -53.3 | NC_005259.1 | + | 4913 | 0.7 | 0.657031 |
Target: 5'- aGCUGCuUUGccguaGGGCACCGCGUgaucGUCCGg -3' miRNA: 3'- -CGAUGcAGC-----UCCGUGGUGCA----UAGGUg -5' |
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23483 | 3' | -53.3 | NC_005259.1 | + | 50007 | 0.7 | 0.667938 |
Target: 5'- gGCUGCccUCGugcacGGGCGCUGCGUaAUCCGCu -3' miRNA: 3'- -CGAUGc-AGC-----UCCGUGGUGCA-UAGGUG- -5' |
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23483 | 3' | -53.3 | NC_005259.1 | + | 27505 | 0.71 | 0.591452 |
Target: 5'- --cGCGcCGAGGU-CgACGUGUCCGCa -3' miRNA: 3'- cgaUGCaGCUCCGuGgUGCAUAGGUG- -5' |
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23483 | 3' | -53.3 | NC_005259.1 | + | 56583 | 0.72 | 0.569767 |
Target: 5'- gGCUGCGaUGA-GCGCCuCGUAUCCAa -3' miRNA: 3'- -CGAUGCaGCUcCGUGGuGCAUAGGUg -5' |
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23483 | 3' | -53.3 | NC_005259.1 | + | 28799 | 0.72 | 0.548283 |
Target: 5'- cGCUACGccaUCGA--CACCACG-AUCCACg -3' miRNA: 3'- -CGAUGC---AGCUccGUGGUGCaUAGGUG- -5' |
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23483 | 3' | -53.3 | NC_005259.1 | + | 62788 | 0.73 | 0.50615 |
Target: 5'- aGCUugGUCuuGaGCGCCGCGUcAUUCACc -3' miRNA: 3'- -CGAugCAGcuC-CGUGGUGCA-UAGGUG- -5' |
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23483 | 3' | -53.3 | NC_005259.1 | + | 29361 | 0.74 | 0.455557 |
Target: 5'- cGC--CGUCGAGGCACC-CGUcgagGUCUACc -3' miRNA: 3'- -CGauGCAGCUCCGUGGuGCA----UAGGUG- -5' |
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23483 | 3' | -53.3 | NC_005259.1 | + | 56094 | 0.83 | 0.131924 |
Target: 5'- uGCU-CGUCGGGGcCACCGCGUggCCACc -3' miRNA: 3'- -CGAuGCAGCUCC-GUGGUGCAuaGGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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