Results 1 - 20 of 20 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23483 | 5' | -60 | NC_005259.1 | + | 35083 | 0.66 | 0.556873 |
Target: 5'- cGGUGGccuGCGCaGUccacaagcAGuUGCCGCCCGUUg -3' miRNA: 3'- uCCACC---UGCG-CA--------UC-AUGGCGGGCGGu -5' |
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23483 | 5' | -60 | NC_005259.1 | + | 46570 | 0.66 | 0.546606 |
Target: 5'- --aUGGuCGCGgcGUcgACCGCgCCGCCc -3' miRNA: 3'- uccACCuGCGCauCA--UGGCG-GGCGGu -5' |
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23483 | 5' | -60 | NC_005259.1 | + | 32356 | 0.66 | 0.545583 |
Target: 5'- gAGGUuGAugaccgcCGUGUAGggcgggcACUGCCCGCCGu -3' miRNA: 3'- -UCCAcCU-------GCGCAUCa------UGGCGGGCGGU- -5' |
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23483 | 5' | -60 | NC_005259.1 | + | 23873 | 0.66 | 0.536401 |
Target: 5'- cGaGUGGAUGCGcuauccgcUGCCGCCCgaGCCGc -3' miRNA: 3'- uC-CACCUGCGCauc-----AUGGCGGG--CGGU- -5' |
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23483 | 5' | -60 | NC_005259.1 | + | 6662 | 0.66 | 0.536401 |
Target: 5'- aGGGUGuccguGACGCGcga-GCUGCCCGCUu -3' miRNA: 3'- -UCCAC-----CUGCGCaucaUGGCGGGCGGu -5' |
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23483 | 5' | -60 | NC_005259.1 | + | 35661 | 0.66 | 0.526262 |
Target: 5'- aGGGUGGccaGCGCgGUGGUGgUGCacagcgaCGCCGu -3' miRNA: 3'- -UCCACC---UGCG-CAUCAUgGCGg------GCGGU- -5' |
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23483 | 5' | -60 | NC_005259.1 | + | 11433 | 0.66 | 0.526262 |
Target: 5'- cGG-GGAUGCuUGG-GCCGCUCGCUg -3' miRNA: 3'- uCCaCCUGCGcAUCaUGGCGGGCGGu -5' |
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23483 | 5' | -60 | NC_005259.1 | + | 27253 | 0.66 | 0.506209 |
Target: 5'- gAGGUGaccCGCGUAGgACCGauacgCCGCCu -3' miRNA: 3'- -UCCACcu-GCGCAUCaUGGCg----GGCGGu -5' |
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23483 | 5' | -60 | NC_005259.1 | + | 3130 | 0.67 | 0.496306 |
Target: 5'- -cGUGGGCaGCGgacGGcACCGCCCGUgGg -3' miRNA: 3'- ucCACCUG-CGCa--UCaUGGCGGGCGgU- -5' |
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23483 | 5' | -60 | NC_005259.1 | + | 17217 | 0.67 | 0.448201 |
Target: 5'- cGGGacUGGGCGCG-AGUcaaAUCGCCaGCCGg -3' miRNA: 3'- -UCC--ACCUGCGCaUCA---UGGCGGgCGGU- -5' |
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23483 | 5' | -60 | NC_005259.1 | + | 54522 | 0.67 | 0.448201 |
Target: 5'- gGGGUGG-CGgGUcgAGUAuCCgGCCCaGCCAc -3' miRNA: 3'- -UCCACCuGCgCA--UCAU-GG-CGGG-CGGU- -5' |
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23483 | 5' | -60 | NC_005259.1 | + | 46353 | 0.67 | 0.448201 |
Target: 5'- uAGGUucuGGGcCGCGaUGGcACCGCCCgGCCc -3' miRNA: 3'- -UCCA---CCU-GCGC-AUCaUGGCGGG-CGGu -5' |
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23483 | 5' | -60 | NC_005259.1 | + | 12197 | 0.68 | 0.424227 |
Target: 5'- -cGUGGuCGUGUAGagaugcaccggcgcACCGCCCGCUg -3' miRNA: 3'- ucCACCuGCGCAUCa-------------UGGCGGGCGGu -5' |
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23483 | 5' | -60 | NC_005259.1 | + | 26410 | 0.69 | 0.368632 |
Target: 5'- ---cGGGCGCGgcGGUGCCGCcguagaacgcaCCGCCGa -3' miRNA: 3'- uccaCCUGCGCa-UCAUGGCG-----------GGCGGU- -5' |
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23483 | 5' | -60 | NC_005259.1 | + | 21068 | 0.69 | 0.360408 |
Target: 5'- cGuGUGGACGCGUA-UGCCGCUgucgaCGCUg -3' miRNA: 3'- uC-CACCUGCGCAUcAUGGCGG-----GCGGu -5' |
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23483 | 5' | -60 | NC_005259.1 | + | 25937 | 0.7 | 0.328809 |
Target: 5'- cGGUGaGCGCacgccGGUGCCcgGCCCGCCGa -3' miRNA: 3'- uCCACcUGCGca---UCAUGG--CGGGCGGU- -5' |
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23483 | 5' | -60 | NC_005259.1 | + | 32979 | 0.71 | 0.258955 |
Target: 5'- uGGGUGccGAUGCcgagGGUGCCGCCaCGCCc -3' miRNA: 3'- -UCCAC--CUGCGca--UCAUGGCGG-GCGGu -5' |
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23483 | 5' | -60 | NC_005259.1 | + | 45669 | 0.72 | 0.246528 |
Target: 5'- ---cGucCGCGUAGUACCGCCUGCuCAg -3' miRNA: 3'- uccaCcuGCGCAUCAUGGCGGGCG-GU- -5' |
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23483 | 5' | -60 | NC_005259.1 | + | 31243 | 0.73 | 0.206892 |
Target: 5'- --uUGGGCGCGgcGGUGCCGCCCcacacGCCGc -3' miRNA: 3'- uccACCUGCGCa-UCAUGGCGGG-----CGGU- -5' |
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23483 | 5' | -60 | NC_005259.1 | + | 48051 | 0.73 | 0.196625 |
Target: 5'- cGGUGGccacgGCGgGUAGcGCCGCCgCGCCc -3' miRNA: 3'- uCCACC-----UGCgCAUCaUGGCGG-GCGGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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