miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23483 5' -60 NC_005259.1 + 35083 0.66 0.556873
Target:  5'- cGGUGGccuGCGCaGUccacaagcAGuUGCCGCCCGUUg -3'
miRNA:   3'- uCCACC---UGCG-CA--------UC-AUGGCGGGCGGu -5'
23483 5' -60 NC_005259.1 + 46570 0.66 0.546606
Target:  5'- --aUGGuCGCGgcGUcgACCGCgCCGCCc -3'
miRNA:   3'- uccACCuGCGCauCA--UGGCG-GGCGGu -5'
23483 5' -60 NC_005259.1 + 32356 0.66 0.545583
Target:  5'- gAGGUuGAugaccgcCGUGUAGggcgggcACUGCCCGCCGu -3'
miRNA:   3'- -UCCAcCU-------GCGCAUCa------UGGCGGGCGGU- -5'
23483 5' -60 NC_005259.1 + 23873 0.66 0.536401
Target:  5'- cGaGUGGAUGCGcuauccgcUGCCGCCCgaGCCGc -3'
miRNA:   3'- uC-CACCUGCGCauc-----AUGGCGGG--CGGU- -5'
23483 5' -60 NC_005259.1 + 6662 0.66 0.536401
Target:  5'- aGGGUGuccguGACGCGcga-GCUGCCCGCUu -3'
miRNA:   3'- -UCCAC-----CUGCGCaucaUGGCGGGCGGu -5'
23483 5' -60 NC_005259.1 + 11433 0.66 0.526262
Target:  5'- cGG-GGAUGCuUGG-GCCGCUCGCUg -3'
miRNA:   3'- uCCaCCUGCGcAUCaUGGCGGGCGGu -5'
23483 5' -60 NC_005259.1 + 35661 0.66 0.526262
Target:  5'- aGGGUGGccaGCGCgGUGGUGgUGCacagcgaCGCCGu -3'
miRNA:   3'- -UCCACC---UGCG-CAUCAUgGCGg------GCGGU- -5'
23483 5' -60 NC_005259.1 + 27253 0.66 0.506209
Target:  5'- gAGGUGaccCGCGUAGgACCGauacgCCGCCu -3'
miRNA:   3'- -UCCACcu-GCGCAUCaUGGCg----GGCGGu -5'
23483 5' -60 NC_005259.1 + 3130 0.67 0.496306
Target:  5'- -cGUGGGCaGCGgacGGcACCGCCCGUgGg -3'
miRNA:   3'- ucCACCUG-CGCa--UCaUGGCGGGCGgU- -5'
23483 5' -60 NC_005259.1 + 17217 0.67 0.448201
Target:  5'- cGGGacUGGGCGCG-AGUcaaAUCGCCaGCCGg -3'
miRNA:   3'- -UCC--ACCUGCGCaUCA---UGGCGGgCGGU- -5'
23483 5' -60 NC_005259.1 + 54522 0.67 0.448201
Target:  5'- gGGGUGG-CGgGUcgAGUAuCCgGCCCaGCCAc -3'
miRNA:   3'- -UCCACCuGCgCA--UCAU-GG-CGGG-CGGU- -5'
23483 5' -60 NC_005259.1 + 46353 0.67 0.448201
Target:  5'- uAGGUucuGGGcCGCGaUGGcACCGCCCgGCCc -3'
miRNA:   3'- -UCCA---CCU-GCGC-AUCaUGGCGGG-CGGu -5'
23483 5' -60 NC_005259.1 + 12197 0.68 0.424227
Target:  5'- -cGUGGuCGUGUAGagaugcaccggcgcACCGCCCGCUg -3'
miRNA:   3'- ucCACCuGCGCAUCa-------------UGGCGGGCGGu -5'
23483 5' -60 NC_005259.1 + 26410 0.69 0.368632
Target:  5'- ---cGGGCGCGgcGGUGCCGCcguagaacgcaCCGCCGa -3'
miRNA:   3'- uccaCCUGCGCa-UCAUGGCG-----------GGCGGU- -5'
23483 5' -60 NC_005259.1 + 21068 0.69 0.360408
Target:  5'- cGuGUGGACGCGUA-UGCCGCUgucgaCGCUg -3'
miRNA:   3'- uC-CACCUGCGCAUcAUGGCGG-----GCGGu -5'
23483 5' -60 NC_005259.1 + 25937 0.7 0.328809
Target:  5'- cGGUGaGCGCacgccGGUGCCcgGCCCGCCGa -3'
miRNA:   3'- uCCACcUGCGca---UCAUGG--CGGGCGGU- -5'
23483 5' -60 NC_005259.1 + 32979 0.71 0.258955
Target:  5'- uGGGUGccGAUGCcgagGGUGCCGCCaCGCCc -3'
miRNA:   3'- -UCCAC--CUGCGca--UCAUGGCGG-GCGGu -5'
23483 5' -60 NC_005259.1 + 45669 0.72 0.246528
Target:  5'- ---cGucCGCGUAGUACCGCCUGCuCAg -3'
miRNA:   3'- uccaCcuGCGCAUCAUGGCGGGCG-GU- -5'
23483 5' -60 NC_005259.1 + 31243 0.73 0.206892
Target:  5'- --uUGGGCGCGgcGGUGCCGCCCcacacGCCGc -3'
miRNA:   3'- uccACCUGCGCa-UCAUGGCGGG-----CGGU- -5'
23483 5' -60 NC_005259.1 + 48051 0.73 0.196625
Target:  5'- cGGUGGccacgGCGgGUAGcGCCGCCgCGCCc -3'
miRNA:   3'- uCCACC-----UGCgCAUCaUGGCGG-GCGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.