Results 1 - 10 of 10 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23484 | 5' | -56.2 | NC_005259.1 | + | 8271 | 0.66 | 0.778953 |
Target: 5'- aCGUaggUGUUGUAccgggugcGCGGGCACCCGc -3' miRNA: 3'- gGCAggaGCAACAUc-------UGCCCGUGGGU- -5' |
|||||||
23484 | 5' | -56.2 | NC_005259.1 | + | 41493 | 0.66 | 0.769226 |
Target: 5'- aCGaCCUCGgcgGUGG-CGGGCAgaCCGu -3' miRNA: 3'- gGCaGGAGCaa-CAUCuGCCCGUg-GGU- -5' |
|||||||
23484 | 5' | -56.2 | NC_005259.1 | + | 10684 | 0.66 | 0.748382 |
Target: 5'- gCCG-CCUCuUUGUcgccguugagcauGGACGGGUaguugGCCCGc -3' miRNA: 3'- -GGCaGGAGcAACA-------------UCUGCCCG-----UGGGU- -5' |
|||||||
23484 | 5' | -56.2 | NC_005259.1 | + | 16672 | 0.67 | 0.708453 |
Target: 5'- aCCG-CCUCGaUGUGGucggcgauccUGGGCACCgAg -3' miRNA: 3'- -GGCaGGAGCaACAUCu---------GCCCGUGGgU- -5' |
|||||||
23484 | 5' | -56.2 | NC_005259.1 | + | 68282 | 0.67 | 0.699065 |
Target: 5'- aCCGUCCUCGccccauacaucgGGAuCGGGCGCguCCGg -3' miRNA: 3'- -GGCAGGAGCaaca--------UCU-GCCCGUG--GGU- -5' |
|||||||
23484 | 5' | -56.2 | NC_005259.1 | + | 68606 | 0.68 | 0.645149 |
Target: 5'- gCGUCaaggaaccgCUUGUUGgccAGcCGGGCACCCu -3' miRNA: 3'- gGCAG---------GAGCAACa--UCuGCCCGUGGGu -5' |
|||||||
23484 | 5' | -56.2 | NC_005259.1 | + | 34884 | 0.68 | 0.634504 |
Target: 5'- aCCGgggugCCUCGggcaGGACGGGcCGCUCGg -3' miRNA: 3'- -GGCa----GGAGCaacaUCUGCCC-GUGGGU- -5' |
|||||||
23484 | 5' | -56.2 | NC_005259.1 | + | 46179 | 0.68 | 0.634504 |
Target: 5'- gCCGggcgCgUCGaUGUuGAUGGGCACCUc -3' miRNA: 3'- -GGCa---GgAGCaACAuCUGCCCGUGGGu -5' |
|||||||
23484 | 5' | -56.2 | NC_005259.1 | + | 48629 | 0.73 | 0.369156 |
Target: 5'- aCUG-CCUCGccg-AGACGGGCugCCAg -3' miRNA: 3'- -GGCaGGAGCaacaUCUGCCCGugGGU- -5' |
|||||||
23484 | 5' | -56.2 | NC_005259.1 | + | 42052 | 0.76 | 0.233419 |
Target: 5'- gCUGUCCUCGggGUGGGCGGcuagguaucgcaGCACCgAg -3' miRNA: 3'- -GGCAGGAGCaaCAUCUGCC------------CGUGGgU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home