miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23484 5' -56.2 NC_005259.1 + 8271 0.66 0.778953
Target:  5'- aCGUaggUGUUGUAccgggugcGCGGGCACCCGc -3'
miRNA:   3'- gGCAggaGCAACAUc-------UGCCCGUGGGU- -5'
23484 5' -56.2 NC_005259.1 + 41493 0.66 0.769226
Target:  5'- aCGaCCUCGgcgGUGG-CGGGCAgaCCGu -3'
miRNA:   3'- gGCaGGAGCaa-CAUCuGCCCGUg-GGU- -5'
23484 5' -56.2 NC_005259.1 + 10684 0.66 0.748382
Target:  5'- gCCG-CCUCuUUGUcgccguugagcauGGACGGGUaguugGCCCGc -3'
miRNA:   3'- -GGCaGGAGcAACA-------------UCUGCCCG-----UGGGU- -5'
23484 5' -56.2 NC_005259.1 + 16672 0.67 0.708453
Target:  5'- aCCG-CCUCGaUGUGGucggcgauccUGGGCACCgAg -3'
miRNA:   3'- -GGCaGGAGCaACAUCu---------GCCCGUGGgU- -5'
23484 5' -56.2 NC_005259.1 + 68282 0.67 0.699065
Target:  5'- aCCGUCCUCGccccauacaucgGGAuCGGGCGCguCCGg -3'
miRNA:   3'- -GGCAGGAGCaaca--------UCU-GCCCGUG--GGU- -5'
23484 5' -56.2 NC_005259.1 + 68606 0.68 0.645149
Target:  5'- gCGUCaaggaaccgCUUGUUGgccAGcCGGGCACCCu -3'
miRNA:   3'- gGCAG---------GAGCAACa--UCuGCCCGUGGGu -5'
23484 5' -56.2 NC_005259.1 + 34884 0.68 0.634504
Target:  5'- aCCGgggugCCUCGggcaGGACGGGcCGCUCGg -3'
miRNA:   3'- -GGCa----GGAGCaacaUCUGCCC-GUGGGU- -5'
23484 5' -56.2 NC_005259.1 + 46179 0.68 0.634504
Target:  5'- gCCGggcgCgUCGaUGUuGAUGGGCACCUc -3'
miRNA:   3'- -GGCa---GgAGCaACAuCUGCCCGUGGGu -5'
23484 5' -56.2 NC_005259.1 + 48629 0.73 0.369156
Target:  5'- aCUG-CCUCGccg-AGACGGGCugCCAg -3'
miRNA:   3'- -GGCaGGAGCaacaUCUGCCCGugGGU- -5'
23484 5' -56.2 NC_005259.1 + 42052 0.76 0.233419
Target:  5'- gCUGUCCUCGggGUGGGCGGcuagguaucgcaGCACCgAg -3'
miRNA:   3'- -GGCAGGAGCaaCAUCUGCC------------CGUGGgU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.