Results 1 - 18 of 18 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23485 | 3' | -50.9 | NC_005259.1 | + | 42042 | 0.66 | 0.943943 |
Target: 5'- gGUCgACUGCGCuGUccucgGggUGgGCGGCu -3' miRNA: 3'- aUAGgUGGCGUG-CAa----CuuACaCGUCG- -5' |
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23485 | 3' | -50.9 | NC_005259.1 | + | 27855 | 0.66 | 0.943943 |
Target: 5'- gGUCgcgCGCCGUACGaccgcccucUUGggUGUGCAc- -3' miRNA: 3'- aUAG---GUGGCGUGC---------AACuuACACGUcg -5' |
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23485 | 3' | -50.9 | NC_005259.1 | + | 42189 | 0.66 | 0.943943 |
Target: 5'- gUAUCCGCUGCGCGccgucgcgaUGGAUGcccGCcGCg -3' miRNA: 3'- -AUAGGUGGCGUGCa--------ACUUACa--CGuCG- -5' |
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23485 | 3' | -50.9 | NC_005259.1 | + | 64754 | 0.66 | 0.938836 |
Target: 5'- --cCCACCGCGCcucgcGAcgGUGCgccucGGCg -3' miRNA: 3'- auaGGUGGCGUGcaa--CUuaCACG-----UCG- -5' |
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23485 | 3' | -50.9 | NC_005259.1 | + | 35859 | 0.66 | 0.938836 |
Target: 5'- gGUCCGCCGCcGCGUccacc--GCAGCc -3' miRNA: 3'- aUAGGUGGCG-UGCAacuuacaCGUCG- -5' |
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23485 | 3' | -50.9 | NC_005259.1 | + | 66079 | 0.66 | 0.927752 |
Target: 5'- --gCCACacaguGCACGccUGAugGUGCAGCg -3' miRNA: 3'- auaGGUGg----CGUGCa-ACUuaCACGUCG- -5' |
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23485 | 3' | -50.9 | NC_005259.1 | + | 31764 | 0.66 | 0.915502 |
Target: 5'- --cCCACCGCccCGUcaucGAUGUGCuGCg -3' miRNA: 3'- auaGGUGGCGu-GCAac--UUACACGuCG- -5' |
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23485 | 3' | -50.9 | NC_005259.1 | + | 48463 | 0.66 | 0.915502 |
Target: 5'- -uUCCACCGCGCGccGggUcgcGU-CGGCc -3' miRNA: 3'- auAGGUGGCGUGCaaCuuA---CAcGUCG- -5' |
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23485 | 3' | -50.9 | NC_005259.1 | + | 56236 | 0.67 | 0.902094 |
Target: 5'- gUcgCCGCCGacCACGUUGGGaucgGCGGCc -3' miRNA: 3'- -AuaGGUGGC--GUGCAACUUaca-CGUCG- -5' |
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23485 | 3' | -50.9 | NC_005259.1 | + | 47682 | 0.67 | 0.902094 |
Target: 5'- --gCCACCuuuuGCAUgcccgGUUGGAUGcGCGGCa -3' miRNA: 3'- auaGGUGG----CGUG-----CAACUUACaCGUCG- -5' |
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23485 | 3' | -50.9 | NC_005259.1 | + | 769 | 0.68 | 0.871905 |
Target: 5'- cGUCCACCGCGCc--GAg---GCGGCu -3' miRNA: 3'- aUAGGUGGCGUGcaaCUuacaCGUCG- -5' |
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23485 | 3' | -50.9 | NC_005259.1 | + | 6271 | 0.68 | 0.863687 |
Target: 5'- --gCCGCCGCGCcuaccucgugGUcGAGUgGUGCGGUa -3' miRNA: 3'- auaGGUGGCGUG----------CAaCUUA-CACGUCG- -5' |
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23485 | 3' | -50.9 | NC_005259.1 | + | 2534 | 0.69 | 0.818951 |
Target: 5'- --gCCACCGCGCGcaUUGGAcagaucGCGGCg -3' miRNA: 3'- auaGGUGGCGUGC--AACUUaca---CGUCG- -5' |
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23485 | 3' | -50.9 | NC_005259.1 | + | 4438 | 0.69 | 0.799537 |
Target: 5'- gGUCgaGCCGCcCGUgcGAGUGgGCAGCg -3' miRNA: 3'- aUAGg-UGGCGuGCAa-CUUACaCGUCG- -5' |
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23485 | 3' | -50.9 | NC_005259.1 | + | 47829 | 0.71 | 0.726401 |
Target: 5'- --gCCACCGCugcCGcUGAcgGUGCgAGCu -3' miRNA: 3'- auaGGUGGCGu--GCaACUuaCACG-UCG- -5' |
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23485 | 3' | -50.9 | NC_005259.1 | + | 33408 | 0.71 | 0.714357 |
Target: 5'- gUGUCCACCGCGCGUacgccucccagcGCGGCu -3' miRNA: 3'- -AUAGGUGGCGUGCAacuuaca-----CGUCG- -5' |
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23485 | 3' | -50.9 | NC_005259.1 | + | 4501 | 0.71 | 0.682154 |
Target: 5'- aUcgCCACCGCGCcggGAGUGgcgcugcGCGGCa -3' miRNA: 3'- -AuaGGUGGCGUGcaaCUUACa------CGUCG- -5' |
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23485 | 3' | -50.9 | NC_005259.1 | + | 26176 | 0.73 | 0.58074 |
Target: 5'- cGUCCugUGCGaucuccaGAAUGUGCGGCa -3' miRNA: 3'- aUAGGugGCGUgcaa---CUUACACGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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