Results 1 - 6 of 6 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23486 | 3' | -53.6 | NC_005259.1 | + | 45497 | 0.66 | 0.849527 |
Target: 5'- gUGGCCUUGGUCGcUGUG-GCCa--- -3' miRNA: 3'- aGCUGGGACUAGCcACACaCGGaaug -5' |
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23486 | 3' | -53.6 | NC_005259.1 | + | 17303 | 0.66 | 0.849527 |
Target: 5'- cUUGACCCUGuacgccgagCGGUaccccgaggGUGUGCCg--- -3' miRNA: 3'- -AGCUGGGACua-------GCCA---------CACACGGaaug -5' |
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23486 | 3' | -53.6 | NC_005259.1 | + | 27476 | 0.68 | 0.74428 |
Target: 5'- -gGGCCggGGUCGGUGUG-GCCa--- -3' miRNA: 3'- agCUGGgaCUAGCCACACaCGGaaug -5' |
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23486 | 3' | -53.6 | NC_005259.1 | + | 64783 | 0.68 | 0.74428 |
Target: 5'- gCGGCCCgcugcGAcUGGcUGUGUGCCUcgGCc -3' miRNA: 3'- aGCUGGGa----CUaGCC-ACACACGGAa-UG- -5' |
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23486 | 3' | -53.6 | NC_005259.1 | + | 40695 | 0.69 | 0.691036 |
Target: 5'- cCGGCCCgaUGAUCGGg--GUGCCc--- -3' miRNA: 3'- aGCUGGG--ACUAGCCacaCACGGaaug -5' |
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23486 | 3' | -53.6 | NC_005259.1 | + | 45450 | 0.72 | 0.538466 |
Target: 5'- cUCGGuCCUUGAUCGGg--GUGCCgaACg -3' miRNA: 3'- -AGCU-GGGACUAGCCacaCACGGaaUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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