miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23488 3' -57.4 NC_005259.1 + 58923 0.66 0.629639
Target:  5'- gGUCUUGucgucGGCG-GGCGcGGUGGcAGCGUc -3'
miRNA:   3'- -UAGAAC-----UCGCaCCGCuCCGUC-UCGCG- -5'
23488 3' -57.4 NC_005259.1 + 6195 0.66 0.607981
Target:  5'- gAUCUgagcAGCGUGaGCGGGGU-GAGcCGCc -3'
miRNA:   3'- -UAGAac--UCGCAC-CGCUCCGuCUC-GCG- -5'
23488 3' -57.4 NC_005259.1 + 31068 0.66 0.607981
Target:  5'- --gUUGAucGgGUcGGCGAGGUucccGAGCGCg -3'
miRNA:   3'- uagAACU--CgCA-CCGCUCCGu---CUCGCG- -5'
23488 3' -57.4 NC_005259.1 + 43943 0.66 0.597178
Target:  5'- -aCUgacAGCGUcGGCGAugGGCGGGGcCGCc -3'
miRNA:   3'- uaGAac-UCGCA-CCGCU--CCGUCUC-GCG- -5'
23488 3' -57.4 NC_005259.1 + 68122 0.67 0.543755
Target:  5'- gGUCgaGAGCaGcGGCGAgcucGGCAGGauGCGCg -3'
miRNA:   3'- -UAGaaCUCG-CaCCGCU----CCGUCU--CGCG- -5'
23488 3' -57.4 NC_005259.1 + 27989 0.68 0.512444
Target:  5'- -cCUUGGGUGgugcgGGUgccGGGGCGGGGuCGCc -3'
miRNA:   3'- uaGAACUCGCa----CCG---CUCCGUCUC-GCG- -5'
23488 3' -57.4 NC_005259.1 + 23592 0.68 0.50217
Target:  5'- ---gUGAGCGUGGCacGGCAGuuccccGCGUg -3'
miRNA:   3'- uagaACUCGCACCGcuCCGUCu-----CGCG- -5'
23488 3' -57.4 NC_005259.1 + 36296 0.68 0.491987
Target:  5'- uUCUUGAGCGcGaGCGcuuGGGCGG-GCGg -3'
miRNA:   3'- uAGAACUCGCaC-CGC---UCCGUCuCGCg -5'
23488 3' -57.4 NC_005259.1 + 58012 0.69 0.442611
Target:  5'- cAUgUUGAGgauCGUccGGCGAGaCAGGGCGCg -3'
miRNA:   3'- -UAgAACUC---GCA--CCGCUCcGUCUCGCG- -5'
23488 3' -57.4 NC_005259.1 + 51431 0.69 0.433073
Target:  5'- gGUCUUGGGCG-GGCcacGGGGCcucGCGCc -3'
miRNA:   3'- -UAGAACUCGCaCCG---CUCCGucuCGCG- -5'
23488 3' -57.4 NC_005259.1 + 62793 0.72 0.31169
Target:  5'- gGUCUUGAGCGccgcgucauucaccuUGaagcgccgcuugcccGCGAGGUcGAGCGCg -3'
miRNA:   3'- -UAGAACUCGC---------------AC---------------CGCUCCGuCUCGCG- -5'
23488 3' -57.4 NC_005259.1 + 8450 0.75 0.198359
Target:  5'- gGUCUcG-GUGUGGuCGAGGUAGAGCuGCa -3'
miRNA:   3'- -UAGAaCuCGCACC-GCUCCGUCUCG-CG- -5'
23488 3' -57.4 NC_005259.1 + 47048 0.76 0.16867
Target:  5'- gAUCUgcgcGAGCGUGuuggugaGCGAGGC-GAGCGCc -3'
miRNA:   3'- -UAGAa---CUCGCAC-------CGCUCCGuCUCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.