Results 1 - 20 of 24 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23488 | 5' | -60.8 | NC_005259.1 | + | 20654 | 0.66 | 0.493225 |
Target: 5'- uCGGCGG-CACCg-GG-GCCgAGGAc- -3' miRNA: 3'- -GCCGCCaGUGGagCCaCGGgUCCUag -5' |
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23488 | 5' | -60.8 | NC_005259.1 | + | 41638 | 0.66 | 0.472906 |
Target: 5'- uGGCGGU-GCCggucugcgggcgcUCGGUGagCGGGAUCu -3' miRNA: 3'- gCCGCCAgUGG-------------AGCCACggGUCCUAG- -5' |
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23488 | 5' | -60.8 | NC_005259.1 | + | 5845 | 0.66 | 0.472906 |
Target: 5'- aCGuGCGcaugcucGUCGCCUCGGUGCuCCAcGAg- -3' miRNA: 3'- -GC-CGC-------CAGUGGAGCCACG-GGUcCUag -5' |
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23488 | 5' | -60.8 | NC_005259.1 | + | 34861 | 0.66 | 0.464329 |
Target: 5'- aGGCGuGUCcuCgUCGGUGCcggaCCGGGGUg -3' miRNA: 3'- gCCGC-CAGu-GgAGCCACG----GGUCCUAg -5' |
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23488 | 5' | -60.8 | NC_005259.1 | + | 66905 | 0.66 | 0.483498 |
Target: 5'- aCGGCGGUagauCCggcagcgcgCGGUGCucgaCCGGGGUg -3' miRNA: 3'- -GCCGCCAgu--GGa--------GCCACG----GGUCCUAg -5' |
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23488 | 5' | -60.8 | NC_005259.1 | + | 4752 | 0.66 | 0.50304 |
Target: 5'- aGGcCGGUC-CCUCGG-GCC-GGGcUCa -3' miRNA: 3'- gCC-GCCAGuGGAGCCaCGGgUCCuAG- -5' |
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23488 | 5' | -60.8 | NC_005259.1 | + | 65136 | 0.66 | 0.513933 |
Target: 5'- cCGGCGGcCACCcccgacaagucgaaaCGGgccaugGCCCGccGGGUCa -3' miRNA: 3'- -GCCGCCaGUGGa--------------GCCa-----CGGGU--CCUAG- -5' |
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23488 | 5' | -60.8 | NC_005259.1 | + | 15145 | 0.67 | 0.40935 |
Target: 5'- aCGG-GGcCACCUCGGUGgCCgAGGc-- -3' miRNA: 3'- -GCCgCCaGUGGAGCCAC-GGgUCCuag -5' |
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23488 | 5' | -60.8 | NC_005259.1 | + | 60053 | 0.67 | 0.445563 |
Target: 5'- uCGG-GGUCuuCUCGG-GCUCAGGcUCg -3' miRNA: 3'- -GCCgCCAGugGAGCCaCGGGUCCuAG- -5' |
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23488 | 5' | -60.8 | NC_005259.1 | + | 37282 | 0.67 | 0.445563 |
Target: 5'- cCGGCaGGacuugCAUggCGGUGCCCGccGGGUCa -3' miRNA: 3'- -GCCG-CCa----GUGgaGCCACGGGU--CCUAG- -5' |
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23488 | 5' | -60.8 | NC_005259.1 | + | 14075 | 0.67 | 0.445563 |
Target: 5'- aCGGCGGUgGCCUacGUGCgCAGcgaGGUCg -3' miRNA: 3'- -GCCGCCAgUGGAgcCACGgGUC---CUAG- -5' |
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23488 | 5' | -60.8 | NC_005259.1 | + | 33324 | 0.68 | 0.366757 |
Target: 5'- uCGGCGGUCACg-CGGaagUGaUCGGGGUCg -3' miRNA: 3'- -GCCGCCAGUGgaGCC---ACgGGUCCUAG- -5' |
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23488 | 5' | -60.8 | NC_005259.1 | + | 63666 | 0.68 | 0.391945 |
Target: 5'- aCGcCGGaCACCUCGGgcaccggcgcGCCgGGGAUCu -3' miRNA: 3'- -GCcGCCaGUGGAGCCa---------CGGgUCCUAG- -5' |
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23488 | 5' | -60.8 | NC_005259.1 | + | 61053 | 0.68 | 0.375028 |
Target: 5'- gGGCGGcUCACCUUG-UGCCgGGcAUCg -3' miRNA: 3'- gCCGCC-AGUGGAGCcACGGgUCcUAG- -5' |
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23488 | 5' | -60.8 | NC_005259.1 | + | 55018 | 0.68 | 0.365937 |
Target: 5'- uGGCGGUCGUCUCGGcacgggcUGCCgAGGu-- -3' miRNA: 3'- gCCGCCAGUGGAGCC-------ACGGgUCCuag -5' |
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23488 | 5' | -60.8 | NC_005259.1 | + | 41593 | 0.69 | 0.327316 |
Target: 5'- uGaGCGGUCGCgCgUCGGUGUUUcGGAUCg -3' miRNA: 3'- gC-CGCCAGUG-G-AGCCACGGGuCCUAG- -5' |
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23488 | 5' | -60.8 | NC_005259.1 | + | 16797 | 0.69 | 0.327316 |
Target: 5'- -cGCGGUCGCguacaucgcgCUCGG-GgCCGGGGUCa -3' miRNA: 3'- gcCGCCAGUG----------GAGCCaCgGGUCCUAG- -5' |
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23488 | 5' | -60.8 | NC_005259.1 | + | 18705 | 0.69 | 0.311713 |
Target: 5'- aCGGCGGUCugACCucgaucaUCGGgccGCCCGGcAUCg -3' miRNA: 3'- -GCCGCCAG--UGG-------AGCCa--CGGGUCcUAG- -5' |
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23488 | 5' | -60.8 | NC_005259.1 | + | 58656 | 0.7 | 0.277523 |
Target: 5'- -cGCGGUaGCC-CGGUGCaCCGGGGUg -3' miRNA: 3'- gcCGCCAgUGGaGCCACG-GGUCCUAg -5' |
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23488 | 5' | -60.8 | NC_005259.1 | + | 53529 | 0.71 | 0.264453 |
Target: 5'- -aGCGG-CACgggCUCGGUGCCCGGuGUCg -3' miRNA: 3'- gcCGCCaGUG---GAGCCACGGGUCcUAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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