miRNA display CGI


Results 21 - 24 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23488 5' -60.8 NC_005259.1 + 26839 0.71 0.239814
Target:  5'- gGGCGGUCugCUCGGg---CAGGAUg -3'
miRNA:   3'- gCCGCCAGugGAGCCacggGUCCUAg -5'
23488 5' -60.8 NC_005259.1 + 27408 0.78 0.07777
Target:  5'- gCGGCGG-CAgCUCGGUGCCCgcgAGGAa- -3'
miRNA:   3'- -GCCGCCaGUgGAGCCACGGG---UCCUag -5'
23488 5' -60.8 NC_005259.1 + 31946 0.79 0.06601
Target:  5'- aGGCGGUUACCUCgGGUGCCUgAGGuuUCa -3'
miRNA:   3'- gCCGCCAGUGGAG-CCACGGG-UCCu-AG- -5'
23488 5' -60.8 NC_005259.1 + 68703 0.8 0.05898
Target:  5'- aGGCGGgcagCGCgUCGGUGCCCgagaacuGGGGUCg -3'
miRNA:   3'- gCCGCCa---GUGgAGCCACGGG-------UCCUAG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.