miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23489 3' -58.8 NC_005259.1 + 60596 0.66 0.614823
Target:  5'- gUCGG-GUGCCgucauCGAgcAGcacaGGCGGCGAGg -3'
miRNA:   3'- -AGCCaCACGG-----GCUacUC----UCGCCGCUC- -5'
23489 3' -58.8 NC_005259.1 + 39132 0.66 0.614823
Target:  5'- aUCGGUGagcUGCCCGAUGuGAuCGcCGAc -3'
miRNA:   3'- -AGCCAC---ACGGGCUACuCUcGCcGCUc -5'
23489 3' -58.8 NC_005259.1 + 31956 0.66 0.591665
Target:  5'- cUCGG-GUGCCUGAgguuucaaacagGAcAGCGGUGAc -3'
miRNA:   3'- -AGCCaCACGGGCUa-----------CUcUCGCCGCUc -5'
23489 3' -58.8 NC_005259.1 + 58776 0.67 0.531542
Target:  5'- gCGGgcgcUGUGCgCCGGUcGAG-GCGGUGAu -3'
miRNA:   3'- aGCC----ACACG-GGCUA-CUCuCGCCGCUc -5'
23489 3' -58.8 NC_005259.1 + 12014 0.67 0.511298
Target:  5'- gUCGGUG-GCCuuguaCGGUGcGGGCGGCa-- -3'
miRNA:   3'- -AGCCACaCGG-----GCUACuCUCGCCGcuc -5'
23489 3' -58.8 NC_005259.1 + 35190 0.68 0.501297
Target:  5'- cCGGUGagcaGCaCCGugccgccUGAG-GCGGCGAGg -3'
miRNA:   3'- aGCCACa---CG-GGCu------ACUCuCGCCGCUC- -5'
23489 3' -58.8 NC_005259.1 + 51019 0.68 0.491381
Target:  5'- gUUGGUcGUGCuaCCGAc--GAGCGGCGGGc -3'
miRNA:   3'- -AGCCA-CACG--GGCUacuCUCGCCGCUC- -5'
23489 3' -58.8 NC_005259.1 + 28324 0.68 0.479605
Target:  5'- aUCGGUGUGCCguccuu-GGCGGCGAa -3'
miRNA:   3'- -AGCCACACGGgcuacucUCGCCGCUc -5'
23489 3' -58.8 NC_005259.1 + 10251 0.69 0.433966
Target:  5'- gCGGUGUGCuuGAUGAGcgGGcCGGUc-- -3'
miRNA:   3'- aGCCACACGggCUACUC--UC-GCCGcuc -5'
23489 3' -58.8 NC_005259.1 + 50363 0.69 0.424777
Target:  5'- gUCGGUGUGCUCGgcGAGAaacuCGGCc-- -3'
miRNA:   3'- -AGCCACACGGGCuaCUCUc---GCCGcuc -5'
23489 3' -58.8 NC_005259.1 + 61740 0.69 0.424777
Target:  5'- -aGGUGUGCguCCGgcGAGAucuguGCGGCGGc -3'
miRNA:   3'- agCCACACG--GGCuaCUCU-----CGCCGCUc -5'
23489 3' -58.8 NC_005259.1 + 27364 0.7 0.380638
Target:  5'- aUCGGgcuugGUGCCCGGcacggUGAccGGCGGCGGu -3'
miRNA:   3'- -AGCCa----CACGGGCU-----ACUc-UCGCCGCUc -5'
23489 3' -58.8 NC_005259.1 + 53535 0.71 0.331871
Target:  5'- aCGGgcucgGUGCCCGGUGucggcucGGGCGGUGcGa -3'
miRNA:   3'- aGCCa----CACGGGCUACu------CUCGCCGCuC- -5'
23489 3' -58.8 NC_005259.1 + 60992 0.71 0.309267
Target:  5'- uUCGGUGagcucgcGCCCGucgacgGUGAGcuuccacucgguGGCGGCGAGg -3'
miRNA:   3'- -AGCCACa------CGGGC------UACUC------------UCGCCGCUC- -5'
23489 3' -58.8 NC_005259.1 + 5635 0.72 0.274239
Target:  5'- cCGGaucGUGCCCGgcGAGGaCGGCGGGc -3'
miRNA:   3'- aGCCa--CACGGGCuaCUCUcGCCGCUC- -5'
23489 3' -58.8 NC_005259.1 + 61594 0.74 0.219298
Target:  5'- gCGGUG-GgCCGGUGGGGuCGGCGGGg -3'
miRNA:   3'- aGCCACaCgGGCUACUCUcGCCGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.