Results 1 - 16 of 16 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23489 | 3' | -58.8 | NC_005259.1 | + | 39132 | 0.66 | 0.614823 |
Target: 5'- aUCGGUGagcUGCCCGAUGuGAuCGcCGAc -3' miRNA: 3'- -AGCCAC---ACGGGCUACuCUcGCcGCUc -5' |
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23489 | 3' | -58.8 | NC_005259.1 | + | 60596 | 0.66 | 0.614823 |
Target: 5'- gUCGG-GUGCCgucauCGAgcAGcacaGGCGGCGAGg -3' miRNA: 3'- -AGCCaCACGG-----GCUacUC----UCGCCGCUC- -5' |
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23489 | 3' | -58.8 | NC_005259.1 | + | 31956 | 0.66 | 0.591665 |
Target: 5'- cUCGG-GUGCCUGAgguuucaaacagGAcAGCGGUGAc -3' miRNA: 3'- -AGCCaCACGGGCUa-----------CUcUCGCCGCUc -5' |
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23489 | 3' | -58.8 | NC_005259.1 | + | 58776 | 0.67 | 0.531542 |
Target: 5'- gCGGgcgcUGUGCgCCGGUcGAG-GCGGUGAu -3' miRNA: 3'- aGCC----ACACG-GGCUA-CUCuCGCCGCUc -5' |
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23489 | 3' | -58.8 | NC_005259.1 | + | 12014 | 0.67 | 0.511298 |
Target: 5'- gUCGGUG-GCCuuguaCGGUGcGGGCGGCa-- -3' miRNA: 3'- -AGCCACaCGG-----GCUACuCUCGCCGcuc -5' |
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23489 | 3' | -58.8 | NC_005259.1 | + | 35190 | 0.68 | 0.501297 |
Target: 5'- cCGGUGagcaGCaCCGugccgccUGAG-GCGGCGAGg -3' miRNA: 3'- aGCCACa---CG-GGCu------ACUCuCGCCGCUC- -5' |
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23489 | 3' | -58.8 | NC_005259.1 | + | 51019 | 0.68 | 0.491381 |
Target: 5'- gUUGGUcGUGCuaCCGAc--GAGCGGCGGGc -3' miRNA: 3'- -AGCCA-CACG--GGCUacuCUCGCCGCUC- -5' |
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23489 | 3' | -58.8 | NC_005259.1 | + | 28324 | 0.68 | 0.479605 |
Target: 5'- aUCGGUGUGCCguccuu-GGCGGCGAa -3' miRNA: 3'- -AGCCACACGGgcuacucUCGCCGCUc -5' |
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23489 | 3' | -58.8 | NC_005259.1 | + | 10251 | 0.69 | 0.433966 |
Target: 5'- gCGGUGUGCuuGAUGAGcgGGcCGGUc-- -3' miRNA: 3'- aGCCACACGggCUACUC--UC-GCCGcuc -5' |
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23489 | 3' | -58.8 | NC_005259.1 | + | 61740 | 0.69 | 0.424777 |
Target: 5'- -aGGUGUGCguCCGgcGAGAucuguGCGGCGGc -3' miRNA: 3'- agCCACACG--GGCuaCUCU-----CGCCGCUc -5' |
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23489 | 3' | -58.8 | NC_005259.1 | + | 50363 | 0.69 | 0.424777 |
Target: 5'- gUCGGUGUGCUCGgcGAGAaacuCGGCc-- -3' miRNA: 3'- -AGCCACACGGGCuaCUCUc---GCCGcuc -5' |
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23489 | 3' | -58.8 | NC_005259.1 | + | 27364 | 0.7 | 0.380638 |
Target: 5'- aUCGGgcuugGUGCCCGGcacggUGAccGGCGGCGGu -3' miRNA: 3'- -AGCCa----CACGGGCU-----ACUc-UCGCCGCUc -5' |
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23489 | 3' | -58.8 | NC_005259.1 | + | 53535 | 0.71 | 0.331871 |
Target: 5'- aCGGgcucgGUGCCCGGUGucggcucGGGCGGUGcGa -3' miRNA: 3'- aGCCa----CACGGGCUACu------CUCGCCGCuC- -5' |
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23489 | 3' | -58.8 | NC_005259.1 | + | 60992 | 0.71 | 0.309267 |
Target: 5'- uUCGGUGagcucgcGCCCGucgacgGUGAGcuuccacucgguGGCGGCGAGg -3' miRNA: 3'- -AGCCACa------CGGGC------UACUC------------UCGCCGCUC- -5' |
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23489 | 3' | -58.8 | NC_005259.1 | + | 5635 | 0.72 | 0.274239 |
Target: 5'- cCGGaucGUGCCCGgcGAGGaCGGCGGGc -3' miRNA: 3'- aGCCa--CACGGGCuaCUCUcGCCGCUC- -5' |
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23489 | 3' | -58.8 | NC_005259.1 | + | 61594 | 0.74 | 0.219298 |
Target: 5'- gCGGUG-GgCCGGUGGGGuCGGCGGGg -3' miRNA: 3'- aGCCACaCgGGCUACUCUcGCCGCUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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