Results 1 - 20 of 23 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
2349 | 3' | -53 | NC_001416.1 | + | 5579 | 0.66 | 0.779894 |
Target: 5'- aACGGCccgccgCAUUCUG-GCC-GCAGCa -3' miRNA: 3'- -UGCCGuuua--GUGAGACgUGGaCGUCG- -5' |
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2349 | 3' | -53 | NC_001416.1 | + | 13865 | 0.66 | 0.76945 |
Target: 5'- aGCGGCuGAUCACcucCUGCuCCggauCGGCg -3' miRNA: 3'- -UGCCGuUUAGUGa--GACGuGGac--GUCG- -5' |
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2349 | 3' | -53 | NC_001416.1 | + | 5293 | 0.66 | 0.748116 |
Target: 5'- cCGGCAucAAUgGCcuccugaccgCUGUACaCUGCAGCc -3' miRNA: 3'- uGCCGU--UUAgUGa---------GACGUG-GACGUCG- -5' |
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2349 | 3' | -53 | NC_001416.1 | + | 12071 | 0.66 | 0.748116 |
Target: 5'- gGCGGCGcaacGUCGCcagcugUCUGCAcaggagaaaucCCUGCuGGCg -3' miRNA: 3'- -UGCCGUu---UAGUG------AGACGU-----------GGACG-UCG- -5' |
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2349 | 3' | -53 | NC_001416.1 | + | 11828 | 0.67 | 0.726272 |
Target: 5'- gGCGGUAuAUUuCUCcagcgGCGUCUGCAGCc -3' miRNA: 3'- -UGCCGUuUAGuGAGa----CGUGGACGUCG- -5' |
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2349 | 3' | -53 | NC_001416.1 | + | 11081 | 0.67 | 0.726272 |
Target: 5'- cCaGCGAGUCACUCaGCGCaCUGguuaaGGCg -3' miRNA: 3'- uGcCGUUUAGUGAGaCGUG-GACg----UCG- -5' |
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2349 | 3' | -53 | NC_001416.1 | + | 9721 | 0.67 | 0.715192 |
Target: 5'- gACGGUAAu---UUCUGCaACC-GCAGCa -3' miRNA: 3'- -UGCCGUUuaguGAGACG-UGGaCGUCG- -5' |
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2349 | 3' | -53 | NC_001416.1 | + | 16297 | 0.67 | 0.715192 |
Target: 5'- cGCGucuGCGGGUUAUaguUCgacgGCACCUGCAGa -3' miRNA: 3'- -UGC---CGUUUAGUG---AGa---CGUGGACGUCg -5' |
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2349 | 3' | -53 | NC_001416.1 | + | 5752 | 0.67 | 0.704023 |
Target: 5'- aACGGCAucagaugccgGGUUAC-CUGCAgCCaGCGGUg -3' miRNA: 3'- -UGCCGU----------UUAGUGaGACGU-GGaCGUCG- -5' |
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2349 | 3' | -53 | NC_001416.1 | + | 18987 | 0.67 | 0.692779 |
Target: 5'- uGCGGUGAcaGUCACUCcgGC-CCgUGCGGa -3' miRNA: 3'- -UGCCGUU--UAGUGAGa-CGuGG-ACGUCg -5' |
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2349 | 3' | -53 | NC_001416.1 | + | 9226 | 0.67 | 0.681471 |
Target: 5'- cCGGCAGAUU--UCUGCcCCUGCccGGUc -3' miRNA: 3'- uGCCGUUUAGugAGACGuGGACG--UCG- -5' |
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2349 | 3' | -53 | NC_001416.1 | + | 20273 | 0.68 | 0.631274 |
Target: 5'- gUGGCcgccgcguuuuuuGAggACUCUGCGgCUGCGGCa -3' miRNA: 3'- uGCCGu------------UUagUGAGACGUgGACGUCG- -5' |
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2349 | 3' | -53 | NC_001416.1 | + | 40398 | 0.68 | 0.62212 |
Target: 5'- cGCGGCcugauuuaugcuGGUUACUgUUGCGCCUGuUAGCg -3' miRNA: 3'- -UGCCGu-----------UUAGUGA-GACGUGGAC-GUCG- -5' |
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2349 | 3' | -53 | NC_001416.1 | + | 44256 | 0.69 | 0.58903 |
Target: 5'- cAUGGCAAu---CUCUGCAUCUugcccccggcgucGCGGCa -3' miRNA: 3'- -UGCCGUUuaguGAGACGUGGA-------------CGUCG- -5' |
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2349 | 3' | -53 | NC_001416.1 | + | 17413 | 0.69 | 0.567513 |
Target: 5'- uGCGGuCAGGUg---CUGCACCgcugGCGGCg -3' miRNA: 3'- -UGCC-GUUUAgugaGACGUGGa---CGUCG- -5' |
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2349 | 3' | -53 | NC_001416.1 | + | 4735 | 0.7 | 0.501171 |
Target: 5'- aACGGCAuuAUCGCccgUCUGCAacaggCUGcCAGCg -3' miRNA: 3'- -UGCCGUu-UAGUG---AGACGUg----GAC-GUCG- -5' |
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2349 | 3' | -53 | NC_001416.1 | + | 11016 | 0.71 | 0.490432 |
Target: 5'- gACGGCAGAUCGuaugCUGguCCUGUccagAGCc -3' miRNA: 3'- -UGCCGUUUAGUga--GACguGGACG----UCG- -5' |
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2349 | 3' | -53 | NC_001416.1 | + | 20424 | 0.71 | 0.448611 |
Target: 5'- gGCGGCAGAaaAUUCUGC-CaggGCGGCa -3' miRNA: 3'- -UGCCGUUUagUGAGACGuGga-CGUCG- -5' |
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2349 | 3' | -53 | NC_001416.1 | + | 5451 | 0.72 | 0.408838 |
Target: 5'- aACGcGCAGAUCACcgCaGCGgUUGCGGCa -3' miRNA: 3'- -UGC-CGUUUAGUGa-GaCGUgGACGUCG- -5' |
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2349 | 3' | -53 | NC_001416.1 | + | 3719 | 0.74 | 0.301309 |
Target: 5'- gGCGGCAuacaucgccuucacAAUggCGCUCUGCAgcugcguguUCUGCAGCg -3' miRNA: 3'- -UGCCGU--------------UUA--GUGAGACGU---------GGACGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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