miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2349 5' -59.7 NC_001416.1 + 21722 0.65 0.473068
Target:  5'- aCGgaCAGUCAGGGCAG-CCAcagucacucauuguCCGGu -3'
miRNA:   3'- aGUgaGUCGGUCCCGUCuGGU--------------GGCCc -5'
2349 5' -59.7 NC_001416.1 + 13463 0.66 0.44677
Target:  5'- gCAgUCGGCCAGcGUGGugCuCUGGGa -3'
miRNA:   3'- aGUgAGUCGGUCcCGUCugGuGGCCC- -5'
2349 5' -59.7 NC_001416.1 + 11037 0.66 0.437239
Target:  5'- cCugUCcagAGCC-GGGCAGGCgGCaGGGc -3'
miRNA:   3'- aGugAG---UCGGuCCCGUCUGgUGgCCC- -5'
2349 5' -59.7 NC_001416.1 + 5877 0.66 0.427825
Target:  5'- gCACUCAauccGCCGGGcGCGGuuGCgguaugaGCCGGGu -3'
miRNA:   3'- aGUGAGU----CGGUCC-CGUC--UGg------UGGCCC- -5'
2349 5' -59.7 NC_001416.1 + 8838 0.67 0.373968
Target:  5'- aUCACcaguauggUGGCCAGcGGCuauGACUACCGGc -3'
miRNA:   3'- -AGUGa-------GUCGGUC-CCGu--CUGGUGGCCc -5'
2349 5' -59.7 NC_001416.1 + 15119 0.69 0.30222
Target:  5'- cCACccuugCAGCauggGGGGCAG-CCAUUGGGg -3'
miRNA:   3'- aGUGa----GUCGg---UCCCGUCuGGUGGCCC- -5'
2349 5' -59.7 NC_001416.1 + 12900 0.7 0.26717
Target:  5'- gCAgaCAGCCGGucGCAGGCguCCGGGa -3'
miRNA:   3'- aGUgaGUCGGUCc-CGUCUGguGGCCC- -5'
2349 5' -59.7 NC_001416.1 + 5653 0.71 0.227774
Target:  5'- -uGCUgCGGCCAGaaugcGGCGGGCCguuuucacggucauACCGGGg -3'
miRNA:   3'- agUGA-GUCGGUC-----CCGUCUGG--------------UGGCCC- -5'
2349 5' -59.7 NC_001416.1 + 16801 0.74 0.127961
Target:  5'- gUAC-CAGCCgGGGGCAGGCacaccgCGCCGGGc -3'
miRNA:   3'- aGUGaGUCGG-UCCCGUCUG------GUGGCCC- -5'
2349 5' -59.7 NC_001416.1 + 14402 1.11 0.000238
Target:  5'- cUCACUCAGCCAGGGCAGACCACCGGGg -3'
miRNA:   3'- -AGUGAGUCGGUCCCGUCUGGUGGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.