Results 1 - 10 of 10 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2349 | 5' | -59.7 | NC_001416.1 | + | 5653 | 0.71 | 0.227774 |
Target: 5'- -uGCUgCGGCCAGaaugcGGCGGGCCguuuucacggucauACCGGGg -3' miRNA: 3'- agUGA-GUCGGUC-----CCGUCUGG--------------UGGCCC- -5' |
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2349 | 5' | -59.7 | NC_001416.1 | + | 5877 | 0.66 | 0.427825 |
Target: 5'- gCACUCAauccGCCGGGcGCGGuuGCgguaugaGCCGGGu -3' miRNA: 3'- aGUGAGU----CGGUCC-CGUC--UGg------UGGCCC- -5' |
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2349 | 5' | -59.7 | NC_001416.1 | + | 8838 | 0.67 | 0.373968 |
Target: 5'- aUCACcaguauggUGGCCAGcGGCuauGACUACCGGc -3' miRNA: 3'- -AGUGa-------GUCGGUC-CCGu--CUGGUGGCCc -5' |
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2349 | 5' | -59.7 | NC_001416.1 | + | 11037 | 0.66 | 0.437239 |
Target: 5'- cCugUCcagAGCC-GGGCAGGCgGCaGGGc -3' miRNA: 3'- aGugAG---UCGGuCCCGUCUGgUGgCCC- -5' |
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2349 | 5' | -59.7 | NC_001416.1 | + | 12900 | 0.7 | 0.26717 |
Target: 5'- gCAgaCAGCCGGucGCAGGCguCCGGGa -3' miRNA: 3'- aGUgaGUCGGUCc-CGUCUGguGGCCC- -5' |
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2349 | 5' | -59.7 | NC_001416.1 | + | 13463 | 0.66 | 0.44677 |
Target: 5'- gCAgUCGGCCAGcGUGGugCuCUGGGa -3' miRNA: 3'- aGUgAGUCGGUCcCGUCugGuGGCCC- -5' |
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2349 | 5' | -59.7 | NC_001416.1 | + | 14402 | 1.11 | 0.000238 |
Target: 5'- cUCACUCAGCCAGGGCAGACCACCGGGg -3' miRNA: 3'- -AGUGAGUCGGUCCCGUCUGGUGGCCC- -5' |
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2349 | 5' | -59.7 | NC_001416.1 | + | 15119 | 0.69 | 0.30222 |
Target: 5'- cCACccuugCAGCauggGGGGCAG-CCAUUGGGg -3' miRNA: 3'- aGUGa----GUCGg---UCCCGUCuGGUGGCCC- -5' |
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2349 | 5' | -59.7 | NC_001416.1 | + | 16801 | 0.74 | 0.127961 |
Target: 5'- gUAC-CAGCCgGGGGCAGGCacaccgCGCCGGGc -3' miRNA: 3'- aGUGaGUCGG-UCCCGUCUG------GUGGCCC- -5' |
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2349 | 5' | -59.7 | NC_001416.1 | + | 21722 | 0.65 | 0.473068 |
Target: 5'- aCGgaCAGUCAGGGCAG-CCAcagucacucauuguCCGGu -3' miRNA: 3'- aGUgaGUCGGUCCCGUCuGGU--------------GGCCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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